<?xml version='1.0' encoding='UTF-8'?><?xml-stylesheet href="http://www.blogger.com/styles/atom.css" type="text/css"?><feed xmlns='http://www.w3.org/2005/Atom' xmlns:openSearch='http://a9.com/-/spec/opensearchrss/1.0/' xmlns:georss='http://www.georss.org/georss' xmlns:gd='http://schemas.google.com/g/2005' xmlns:thr='http://purl.org/syndication/thread/1.0'><id>tag:blogger.com,1999:blog-840844090656259510</id><updated>2011-09-03T07:25:16.640-07:00</updated><category term='politic graph'/><category term='molecular interaction map'/><category term='python'/><category term='NetworkX'/><category term='social network'/><category term='orthogonal'/><category term='friendship graph'/><category term='todays graph'/><title type='text'>Graphminator</title><subtitle type='html'>by Melih Sözdinler
Since 2008</subtitle><link rel='http://schemas.google.com/g/2005#feed' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/posts/default'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default?max-results=100'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/'/><link rel='hub' href='http://pubsubhubbub.appspot.com/'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><generator version='7.00' uri='http://www.blogger.com'>Blogger</generator><openSearch:totalResults>86</openSearch:totalResults><openSearch:startIndex>1</openSearch:startIndex><openSearch:itemsPerPage>100</openSearch:itemsPerPage><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-954045323005926184</id><published>2011-01-19T12:17:00.000-08:00</published><updated>2011-01-19T12:19:50.627-08:00</updated><title type='text'>We are approaching to 2000 visitors</title><content type='html'>We are about to be 2000 visitors for this blog :). I could not write for months but I have some special exams for PhD called as Qualifying. I hope I will pass these exams and write about new beautiful graph visulizations. See you soon.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-954045323005926184?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/954045323005926184/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=954045323005926184' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/954045323005926184'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/954045323005926184'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2011/01/we-are-approaching-to-2000-visitors.html' title='We are approaching to 2000 visitors'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-1157083754139141693</id><published>2010-12-06T08:49:00.000-08:00</published><updated>2010-12-06T08:54:29.712-08:00</updated><title type='text'>The JavaScript InfoVis Toolkit</title><content type='html'>&lt;a href="http://thejit.org/static/v20/img/marquee/sunburst2.png"&gt;&lt;img style="TEXT-ALIGN: center; MARGIN: 0px auto 10px; WIDTH: 389px; DISPLAY: block; HEIGHT: 179px; CURSOR: hand" border="0" alt="" src="http://thejit.org/static/v20/img/marquee/sunburst2.png" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;When I was surfing, I found really good javascript based visualization tool. It is called "The JavaScript InfoVis Toolkit". It provides really good visualazitons in web browsers and free to use.&lt;br /&gt;&lt;br /&gt;&lt;a href="http://thejit.org/static/v20/img/marquee/force-directed.png"&gt;&lt;img style="TEXT-ALIGN: center; MARGIN: 0px auto 10px; WIDTH: 389px; DISPLAY: block; HEIGHT: 179px; CURSOR: hand" border="0" alt="" src="http://thejit.org/static/v20/img/marquee/force-directed.png" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;a href="http://thejit.org/static/v20/img/marquee/tm.png"&gt;&lt;img style="TEXT-ALIGN: center; MARGIN: 0px auto 10px; WIDTH: 389px; DISPLAY: block; HEIGHT: 179px; CURSOR: hand" border="0" alt="" src="http://thejit.org/static/v20/img/marquee/tm.png" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-1157083754139141693?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/1157083754139141693/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=1157083754139141693' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1157083754139141693'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1157083754139141693'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/12/javascript-infovis-toolkit.html' title='The JavaScript InfoVis Toolkit'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4970611906489044681</id><published>2010-11-26T09:42:00.001-08:00</published><updated>2010-11-26T09:44:25.948-08:00</updated><title type='text'></title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.designinginteractions.com/img/chapters/ch_7.jpg"&gt;&lt;img style="display:block; margin:0px auto 10px; text-align:center;cursor:pointer; cursor:hand;width: 242px; height: 260px;" src="http://www.designinginteractions.com/img/chapters/ch_7.jpg" border="0" alt="" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;Internet Graph&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4970611906489044681?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4970611906489044681/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4970611906489044681' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4970611906489044681'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4970611906489044681'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/11/internet-graph.html' title=''/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-5947626732716071296</id><published>2010-11-14T16:01:00.001-08:00</published><updated>2010-11-14T16:04:45.001-08:00</updated><category scheme='http://www.blogger.com/atom/ns#' term='politic graph'/><category scheme='http://www.blogger.com/atom/ns#' term='todays graph'/><title type='text'>Graph of Today</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.howweknowus.com/wp-content/uploads/2009/09/lobbyists.jpg"&gt;&lt;img style="display: block; margin: 0px auto 10px; text-align: center; cursor: pointer; width: 200px; height: 200px;" src="http://www.howweknowus.com/wp-content/uploads/2009/09/lobbyists.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-5947626732716071296?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/5947626732716071296/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=5947626732716071296' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5947626732716071296'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5947626732716071296'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/11/graph-of-today.html' title='Graph of Today'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-1927760581894164597</id><published>2010-11-08T15:09:00.000-08:00</published><updated>2010-11-08T15:15:14.491-08:00</updated><title type='text'>Graph Tip for the 9th of November</title><content type='html'>How can be the visualisation of the same graph differ? If you are lucky to simplify the original graph, surely you can have better visualizations and better execution times.&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;img style="TEXT-ALIGN: center; MARGIN: 0px auto 10px; WIDTH: 272px; DISPLAY: block; HEIGHT: 288px; CURSOR: hand" border="0" alt="" src="http://mimilp.googlecode.com/svn/trunk/image/P73/sugi.jpg" /&gt;&lt;img style="TEXT-ALIGN: center; MARGIN: 0px auto 10px; WIDTH: 492px; DISPLAY: block; HEIGHT: 208px; CURSOR: hand" border="0" alt="" src="http://mimilp.googlecode.com/svn/trunk/image/P73/sugi_org.jpg" /&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-1927760581894164597?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/1927760581894164597/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=1927760581894164597' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1927760581894164597'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1927760581894164597'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/11/graph-tip-9th-of-november.html' title='Graph Tip for the 9th of November'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-2022293152493917562</id><published>2010-10-31T09:58:00.000-07:00</published><updated>2010-10-31T10:00:37.067-07:00</updated><category scheme='http://www.blogger.com/atom/ns#' term='social network'/><title type='text'>Graph of Today III</title><content type='html'>Romantic relationship network in US school. Blue ones are male and pink ones are female. The data is within 18 months. &lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://faculty.washington.edu/stovel/images/chains-fig.jpg"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 372px; height: 278px;" src="http://faculty.washington.edu/stovel/images/chains-fig.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-2022293152493917562?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/2022293152493917562/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=2022293152493917562' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2022293152493917562'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2022293152493917562'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/10/graph-of-today-iii.html' title='Graph of Today III'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-6170625854158655871</id><published>2010-10-26T13:54:00.000-07:00</published><updated>2010-10-26T13:56:46.319-07:00</updated><category scheme='http://www.blogger.com/atom/ns#' term='orthogonal'/><category scheme='http://www.blogger.com/atom/ns#' term='molecular interaction map'/><title type='text'>Graph of Today II</title><content type='html'>&lt;div&gt;Today's graph is based on the orthogonal layout. Interstingly, a biological notation called MIM notation requires circuitwise drawings. In my recent project, we use OGDF's orthogonal layout and obtained following figure.&lt;/div&gt;&lt;img style="TEXT-ALIGN: center; MARGIN: 0px auto 10px; WIDTH: 280px; DISPLAY: block; HEIGHT: 293px; CURSOR: hand" border="0" alt="" src="http://mimilp.googlecode.com/svn/trunk/image/P73/orto_reduced_s.jpg" /&gt;&lt;br /&gt;&lt;div&gt;&lt;/div&gt;&lt;br /&gt;&lt;div&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-6170625854158655871?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/6170625854158655871/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=6170625854158655871' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6170625854158655871'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6170625854158655871'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/10/graph-of-today-ii.html' title='Graph of Today II'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-2552285034963793555</id><published>2010-10-25T12:11:00.000-07:00</published><updated>2010-10-25T12:18:21.731-07:00</updated><category scheme='http://www.blogger.com/atom/ns#' term='NetworkX'/><category scheme='http://www.blogger.com/atom/ns#' term='python'/><title type='text'>Graph of Today</title><content type='html'>Today I was looking brand new graph libraries and I see NetwokX. It is nice with really good visuals. The base language is python and makes it easier to understand and develop.&lt;br /&gt;&lt;br /&gt;Here is the nice example&lt;br /&gt;&lt;img style="TEXT-ALIGN: center; MARGIN: 0px auto 10px; WIDTH: 380px; DISPLAY: block; HEIGHT: 343px; CURSOR: hand" border="0" alt="" src="http://networkx.lanl.gov/_images/lanl_routes.png" /&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-2552285034963793555?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/2552285034963793555/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=2552285034963793555' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2552285034963793555'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2552285034963793555'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/10/graph-of-today.html' title='Graph of Today'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-7854648331009231345</id><published>2010-07-21T14:24:00.000-07:00</published><updated>2010-07-21T14:32:46.309-07:00</updated><title type='text'>Big Talk</title><content type='html'>Some sayings that were tragic for owners although they were really intelligent. It is better sometimes to be, "Think a lot, speak less" :)&lt;br /&gt;&lt;br /&gt;English: "Computers may just be 1.5 tons in the future"&lt;br /&gt;Turkish: "Bilgisayarlar gelecekte belki sadece 1,5 ton ağırlığında olacaklar."&lt;br /&gt;&lt;br /&gt;Popular Mechanics Journal, 1949&lt;br /&gt;&lt;br /&gt;English: "There is no reason for any individual to have a computer in his/her home"&lt;br /&gt;Turkish: "İnsanların evlerinde bilgisayar bulundurmaları için herhangi bir neden göremiyorum."&lt;br /&gt;&lt;br /&gt;Kenneth Olsen, Digital Equipment Corp Head, 1977&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-7854648331009231345?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/7854648331009231345/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=7854648331009231345' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7854648331009231345'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7854648331009231345'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/07/big-talk.html' title='Big Talk'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-3171903889070775858</id><published>2010-07-21T12:15:00.001-07:00</published><updated>2010-07-21T12:27:45.309-07:00</updated><title type='text'>Long time without post</title><content type='html'>It has been a long time until my last post except today's post. I can not beleive how the time passes so fast. What I have done; I and my ex-advisor sent our &lt;a href="http://hacivat.khas.edu.tr/%7Ecesim/bicluster.html"&gt;revision of the journal paper&lt;/a&gt;. In one of my attended course of Prof. Turkan Haliloglu, we also tried to propose a metric to differentiate native and design 3d complex structures. We submitted a kind of hybrid scoring methodology. Furthermore, with my Phd advisor, we also work on another project to detect dense modules in MIMs. Finally, we also try to code a tool named &lt;a href="http://code.google.com/p/prolivis/"&gt;PROLiVis(&lt;i&gt;&lt;/i&gt;&lt;/a&gt;&lt;i&gt;&lt;a id="project_summary_link" style="text-decoration: none; color: rgb(0, 0, 0);"&gt;PROtein protein interaction Literature Visualization&lt;/a&gt;).&lt;/i&gt;&lt;br /&gt;&lt;br /&gt;Also, with my family, we spent one week holiday at southwest of Turkey that is a motivation for the forthcoming researches.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-3171903889070775858?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/3171903889070775858/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=3171903889070775858' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3171903889070775858'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3171903889070775858'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/07/long-time-without-post.html' title='Long time without post'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-6300032152750441301</id><published>2010-07-21T12:05:00.000-07:00</published><updated>2010-07-21T14:36:36.046-07:00</updated><title type='text'>STRING Protein Protein Interaction Database</title><content type='html'>I am very keen on having a research over PPI networks and their visualization. Recently, I look at STRING database and I see that they have some nice visulizations using just browser api. Indeed you can also query your protein(s).&lt;br /&gt;&lt;pre style="font-family: georgia;" class="programlisting"&gt;In order to have querry for the interaction visulization you just change browser adress bar text. For example,&lt;br /&gt;&lt;br /&gt;http://string-db.org/api/image/network?identifier=4932.YML115C&amp;amp;&lt;br /&gt;required_score=950&amp;amp;network_depth=2&amp;amp;limit=10&amp;amp;network_flavor=evidence&lt;br /&gt;&lt;br /&gt;returns you&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://2.bp.blogspot.com/_cZYY5GrM584/TEdGSVaLEYI/AAAAAAAAASE/sCduZMVYAUI/s1600/network.png"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 172px;" src="http://2.bp.blogspot.com/_cZYY5GrM584/TEdGSVaLEYI/AAAAAAAAASE/sCduZMVYAUI/s200/network.png" alt="" id="BLOGGER_PHOTO_ID_5496439151027491202" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;If you change the "network_depth=2&lt;span style="font-weight: bold;"&gt;&lt;/span&gt;" to "network_depth=3", then,&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;/pre&gt;&lt;a style="font-family: georgia;" onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://3.bp.blogspot.com/_cZYY5GrM584/TEdGzVIAzWI/AAAAAAAAASM/q1jmtVs_y_8/s1600/network.png"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 188px;" src="http://3.bp.blogspot.com/_cZYY5GrM584/TEdGzVIAzWI/AAAAAAAAASM/q1jmtVs_y_8/s200/network.png" alt="" id="BLOGGER_PHOTO_ID_5496439717887004002" border="0" /&gt;&lt;/a&gt;&lt;pre style="font-family: georgia;" class="programlisting"&gt;&lt;br /&gt;Simply you can see interaction neighborhood of any protein using correct naming and id.&lt;/pre&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-6300032152750441301?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/6300032152750441301/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=6300032152750441301' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6300032152750441301'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6300032152750441301'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/07/string-protein-protein-interaction.html' title='STRING Protein Protein Interaction Database'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://2.bp.blogspot.com/_cZYY5GrM584/TEdGSVaLEYI/AAAAAAAAASE/sCduZMVYAUI/s72-c/network.png' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-7486675175140954862</id><published>2010-05-18T07:07:00.000-07:00</published><updated>2010-05-18T07:08:43.338-07:00</updated><title type='text'>Protein Protein Interaction Visualization</title><content type='html'>An interesting java applet based on force directed layout is published in journal and its applet is available at &lt;a href="http://www.charite.de/bioinformatics/interaction/yeast.html"&gt;http://www.charite.de/bioinformatics/interaction/yeast.html&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-7486675175140954862?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/7486675175140954862/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=7486675175140954862' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7486675175140954862'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7486675175140954862'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/05/protein-protein-interaction.html' title='Protein Protein Interaction Visualization'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-7978287944908651576</id><published>2010-05-13T23:40:00.000-07:00</published><updated>2010-05-13T23:41:55.355-07:00</updated><title type='text'>Interesting Layout - May, 14</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/650_big02.jpg"&gt;&lt;img style="cursor: pointer; width: 362px; height: 272px;" src="http://www.visualcomplexity.com/vc/images/650_big02.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/650_big01.jpg"&gt;&lt;img style="cursor: pointer; width: 363px; height: 272px;" src="http://www.visualcomplexity.com/vc/images/650_big01.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-7978287944908651576?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/7978287944908651576/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=7978287944908651576' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7978287944908651576'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7978287944908651576'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/05/interesting-layout-may-14.html' title='Interesting Layout - May, 14'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-3435748128853184154</id><published>2010-05-05T14:20:00.000-07:00</published><updated>2010-05-05T14:21:49.739-07:00</updated><title type='text'>Interesting Layouts</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.galaide.org/wp-content/uploads/2006/05/galaide_graph.jpg"&gt;&lt;img style="cursor: pointer; width: 377px; height: 369px;" src="http://www.galaide.org/wp-content/uploads/2006/05/galaide_graph.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-3435748128853184154?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/3435748128853184154/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=3435748128853184154' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3435748128853184154'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3435748128853184154'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/05/interesting-layouts_05.html' title='Interesting Layouts'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4994438208381726492</id><published>2010-05-04T09:42:00.000-07:00</published><updated>2010-05-04T09:45:37.592-07:00</updated><title type='text'>Interesting Layouts</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://farm4.static.flickr.com/3012/2493684239_e28698d2b9.jpg"&gt;&lt;img style="cursor: pointer; width: 397px; height: 412px;" src="http://farm4.static.flickr.com/3012/2493684239_e28698d2b9.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.improving-visualisation.org/img_uploads/2009-03-05_Thu/20093515242.jpg"&gt;&lt;img style="cursor: pointer; width: 398px; height: 314px;" src="http://www.improving-visualisation.org/img_uploads/2009-03-05_Thu/20093515242.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4994438208381726492?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4994438208381726492/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4994438208381726492' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4994438208381726492'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4994438208381726492'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/05/interesting-layouts_04.html' title='Interesting Layouts'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://farm4.static.flickr.com/3012/2493684239_e28698d2b9_t.jpg' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4446845162709288398</id><published>2010-05-03T13:18:00.000-07:00</published><updated>2010-05-03T13:23:15.670-07:00</updated><title type='text'>Interesting Layouts</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://ifisc.uib.es/EDEN/ToLlarge.png"&gt;&lt;img style="cursor: pointer; width: 399px; height: 256px;" src="http://ifisc.uib.es/EDEN/ToLlarge.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/509_big01.jpg"&gt;&lt;img style="cursor: pointer; width: 400px; height: 300px;" src="http://www.visualcomplexity.com/vc/images/509_big01.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4446845162709288398?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4446845162709288398/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4446845162709288398' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4446845162709288398'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4446845162709288398'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/05/interesting-layouts.html' title='Interesting Layouts'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-1631205391968432724</id><published>2010-05-02T13:15:00.000-07:00</published><updated>2010-05-02T13:22:36.830-07:00</updated><title type='text'>Graphviz - Command Line</title><content type='html'>Today I would like to mention about graphviz command line in windows XP.&lt;br /&gt;&lt;br /&gt;You can use each binary executable at \bin folder. For example for dot.exe and given input.gv file, you can produce pdf,png,jpg outputs as follows;&lt;br /&gt;&lt;br /&gt;PNG : dot -Tpng  input.gv -o out.png&lt;br /&gt;JPG :  dot -Tjpg  input.gv -o out.jpg&lt;br /&gt;PDF : dot -Tpdf  input.gv -o out.pdf&lt;br /&gt;&lt;br /&gt;This is useful since you can easily show your random graphs in hierarchical layout.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-1631205391968432724?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/1631205391968432724/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=1631205391968432724' title='1 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1631205391968432724'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1631205391968432724'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/05/graphviz-command-line.html' title='Graphviz - Command Line'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>1</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-339031315598527608</id><published>2010-05-01T00:27:00.000-07:00</published><updated>2010-05-01T00:31:12.615-07:00</updated><title type='text'>Graphviz - Graph Visualizations</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.graphviz.org/Gallery/directed/profile.png"&gt;&lt;img style="cursor: pointer; width: 382px; height: 382px;" src="http://www.graphviz.org/Gallery/directed/profile.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.graphviz.org/Gallery/twopi/twopi2.png"&gt;&lt;img style="cursor: pointer; width: 382px; height: 402px;" src="http://www.graphviz.org/Gallery/twopi/twopi2.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-339031315598527608?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/339031315598527608/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=339031315598527608' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/339031315598527608'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/339031315598527608'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/05/graphviz-graph-visualizations.html' title='Graphviz - Graph Visualizations'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-2710957625300101130</id><published>2010-04-27T01:19:00.001-07:00</published><updated>2010-04-27T01:27:18.907-07:00</updated><category scheme='http://www.blogger.com/atom/ns#' term='friendship graph'/><title type='text'>Friendship Network in a US School</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/19_big01.jpg"&gt;&lt;img style="cursor: pointer; width: 400px; height: 300px;" src="http://www.visualcomplexity.com/vc/images/19_big01.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;div style="text-align: left;"&gt;I don't know is this network true but it is also used in publications that surely makes it true. Interesting separation between green and white nodes visualized well. There are four main communities of friends in school. Also there are alone nodes which means they do not have any friends unluckily.&lt;br /&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-2710957625300101130?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/2710957625300101130/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=2710957625300101130' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2710957625300101130'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2710957625300101130'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/friendship-network-in-us-school.html' title='Friendship Network in a US School'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-3348857997134146878</id><published>2010-04-27T01:17:00.001-07:00</published><updated>2010-04-27T01:26:47.045-07:00</updated><title type='text'>Interesting Layouts</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.crg.cs.nott.ac.uk/research/applications/pits/mapper1.gif"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 399px; height: 197px;" src="http://www.crg.cs.nott.ac.uk/research/applications/pits/mapper1.gif" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-3348857997134146878?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/3348857997134146878/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=3348857997134146878' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3348857997134146878'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3348857997134146878'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/intersting-layouts_27.html' title='Interesting Layouts'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-1030262836658509438</id><published>2010-04-25T14:18:00.000-07:00</published><updated>2010-04-25T14:22:48.585-07:00</updated><title type='text'>Semaspace: A tool for network visualization</title><content type='html'>I was surfing couple of minutes ago, and by coincidence I see this tool that has nice visualizations.&lt;br /&gt;&lt;br /&gt;&lt;a href="http://vis.mediaartresearch.at/webarchive/public/view/mid:30"&gt;http://vis.mediaartresearch.at/webarchive/public/view/mid:30&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;Their source code is available.&lt;br /&gt;&lt;br /&gt;Some nice screens from their website&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://vis.mediaartresearch.at/webarchive/images/tools/semaspace/edgeattributes.png"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 385px; height: 269px;" src="http://vis.mediaartresearch.at/webarchive/images/tools/semaspace/edgeattributes.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://vis.mediaartresearch.at/webarchive/images/tools/semaspace/screenshot.png"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 386px; height: 229px;" src="http://vis.mediaartresearch.at/webarchive/images/tools/semaspace/screenshot.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-1030262836658509438?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/1030262836658509438/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=1030262836658509438' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1030262836658509438'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1030262836658509438'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/semaspace-tool-for-network.html' title='Semaspace: A tool for network visualization'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-7538701138333365856</id><published>2010-04-24T12:58:00.000-07:00</published><updated>2010-04-27T01:26:27.494-07:00</updated><title type='text'>Interesting Layouts - Circular Layouts More</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://nemo-cyclone.sourceforge.net/ecoli.regulationtrancriptionel.circular.all.export.jpg"&gt;&lt;img style="cursor: pointer; width: 371px; height: 217px;" src="http://nemo-cyclone.sourceforge.net/ecoli.regulationtrancriptionel.circular.all.export.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;/div&gt;&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://pedram.redhive.com/process_stalking_manual/images/circular.gif"&gt;&lt;img style="cursor: pointer; width: 369px; height: 362px;" src="http://pedram.redhive.com/process_stalking_manual/images/circular.gif" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-7538701138333365856?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/7538701138333365856/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=7538701138333365856' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7538701138333365856'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7538701138333365856'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/intersting-layouts-circular-layouts.html' title='Interesting Layouts - Circular Layouts More'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-2036907006641413831</id><published>2010-04-23T08:54:00.000-07:00</published><updated>2010-04-27T01:26:03.484-07:00</updated><title type='text'>Interesting Layouts</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://4.bp.blogspot.com/_cZYY5GrM584/S9HEDYqHmII/AAAAAAAAAR8/t6sNaPuvkWU/s1600/figure.JPG"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 320px; height: 270px;" src="http://4.bp.blogspot.com/_cZYY5GrM584/S9HEDYqHmII/AAAAAAAAAR8/t6sNaPuvkWU/s320/figure.JPG" alt="" id="BLOGGER_PHOTO_ID_5463363385414883458" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;Dynamic Graph and its application link&lt;br /&gt;&lt;/div&gt;&lt;div style="text-align: center;"&gt;&lt;a href="http://www.proce55ing.net/exhibition/works/001/index_link.html"&gt;http://www.proce55ing.net/exhibition/works/001/index_link.html&lt;/a&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-2036907006641413831?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/2036907006641413831/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=2036907006641413831' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2036907006641413831'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2036907006641413831'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/i.html' title='Interesting Layouts'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://4.bp.blogspot.com/_cZYY5GrM584/S9HEDYqHmII/AAAAAAAAAR8/t6sNaPuvkWU/s72-c/figure.JPG' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4712733497387252410</id><published>2010-04-23T05:23:00.000-07:00</published><updated>2010-04-23T05:25:08.987-07:00</updated><title type='text'>What is PI?</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Pi-unrolled-720.gif/350px-Pi-unrolled-720.gif"&gt;&lt;img style="cursor: pointer; width: 350px; height: 111px;" src="http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Pi-unrolled-720.gif/350px-Pi-unrolled-720.gif" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;3.14159265358979323846264338327950288...&lt;br /&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4712733497387252410?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4712733497387252410/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4712733497387252410' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4712733497387252410'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4712733497387252410'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/what-is-pi.html' title='What is PI?'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4031704853473233056</id><published>2010-04-22T15:08:00.001-07:00</published><updated>2010-04-27T01:25:52.222-07:00</updated><title type='text'>Interesting Layouts</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://gephi.org/wp-content/themes/gephi/images/screenshots/layout2.png"&gt;&lt;img style="cursor: pointer; width: 404px; height: 321px;" src="http://gephi.org/wp-content/themes/gephi/images/screenshots/layout2.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4031704853473233056?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4031704853473233056/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4031704853473233056' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4031704853473233056'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4031704853473233056'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/intersting-layouts_22.html' title='Interesting Layouts'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8086284683764800071</id><published>2010-04-21T08:02:00.000-07:00</published><updated>2010-04-27T01:25:42.513-07:00</updated><title type='text'>Interesting Layouts</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://mathworld.wolfram.com/images/eps-gif/KleinGraph_800.gif"&gt;&lt;img style="cursor: pointer; width: 312px; height: 312px;" src="http://mathworld.wolfram.com/images/eps-gif/KleinGraph_800.gif" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;br /&gt;Nodes are drawn on a circle. Each circles have different density of edges.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8086284683764800071?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8086284683764800071/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8086284683764800071' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8086284683764800071'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8086284683764800071'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/intersting-layouts_21.html' title='Interesting Layouts'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-7549471294996517258</id><published>2010-04-20T00:12:00.000-07:00</published><updated>2010-04-27T01:25:26.336-07:00</updated><title type='text'>Interesting Layouts</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.aisee.com/graph_of_the_month/worms2.gif"&gt;&lt;img style="cursor: pointer; width: 360px; height: 360px;" src="http://www.aisee.com/graph_of_the_month/worms2.gif" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;Visualization of 15 minutes of log data for a class B firewall, with and without background worm traffic using &lt;a href="http://www.aisee.com/graph_of_the_month/worms.htm"&gt;aiSee &lt;/a&gt;tool.&lt;br /&gt;&lt;br /&gt;And also you should also check &lt;a href="http://www.maxkiesler.com/wp-content/uploads/2009/06/visualization-of-large-social-networks.png"&gt;these&lt;/a&gt;, about visualization of social networks.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-7549471294996517258?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/7549471294996517258/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=7549471294996517258' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7549471294996517258'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7549471294996517258'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/intersting-layouts.html' title='Interesting Layouts'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4577474696802292216</id><published>2010-04-18T14:42:00.001-07:00</published><updated>2010-04-18T14:45:50.064-07:00</updated><title type='text'>Interesting Layouts - 11</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.kitware.com/news/files/205_EnronBundledGraph.png"&gt;&lt;img style="cursor: pointer; width: 362px; height: 326px;" src="http://www.kitware.com/news/files/205_EnronBundledGraph.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://danielmclaren.net/files/images/2007/clusterball.jpg"&gt;&lt;img style="cursor: pointer; width: 366px; height: 366px;" src="http://danielmclaren.net/files/images/2007/clusterball.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.burlaca.com/wp-content/uploads/2009/01/cnaa2.jpg"&gt;&lt;img style="cursor: pointer; width: 362px; height: 385px;" src="http://www.burlaca.com/wp-content/uploads/2009/01/cnaa2.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.mkbergman.com/wp-content/themes/ai3/images/2007Posts/071115_e8.png"&gt;&lt;img style="cursor: pointer; width: 370px; height: 370px;" src="http://www.mkbergman.com/wp-content/themes/ai3/images/2007Posts/071115_e8.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4577474696802292216?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4577474696802292216/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4577474696802292216' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4577474696802292216'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4577474696802292216'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-11.html' title='Interesting Layouts - 11'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-5182961489717939381</id><published>2010-04-17T11:27:00.001-07:00</published><updated>2010-04-17T11:28:41.662-07:00</updated><title type='text'>Interesting Layouts - 10 - Big Spring Graph</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.mkbergman.com/wp-content/themes/ai3/images/2008Posts/080219_BigGraphSpring.jpg"&gt;&lt;img style="cursor: pointer; width: 366px; height: 356px;" src="http://www.mkbergman.com/wp-content/themes/ai3/images/2008Posts/080219_BigGraphSpring.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-5182961489717939381?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/5182961489717939381/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=5182961489717939381' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5182961489717939381'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5182961489717939381'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-10-big-spring-graph.html' title='Interesting Layouts - 10 - Big Spring Graph'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-2326402618685771408</id><published>2010-04-17T11:21:00.001-07:00</published><updated>2010-04-17T11:26:53.478-07:00</updated><title type='text'>Graph of Day: Us Airways Domestic Flights in USA</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://blog.visualmotive.com/wp-content/uploads/2009/07/graph_usairways_unbundled.jpg"&gt;&lt;img style="cursor: pointer; width: 403px; height: 183px;" src="http://blog.visualmotive.com/wp-content/uploads/2009/07/graph_usairways_unbundled.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://blog.visualmotive.com/wp-content/uploads/2009/07/graph_usairways_bundled.jpg"&gt;&lt;img style="cursor: pointer; width: 405px; height: 185px;" src="http://blog.visualmotive.com/wp-content/uploads/2009/07/graph_usairways_bundled.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-2326402618685771408?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/2326402618685771408/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=2326402618685771408' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2326402618685771408'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2326402618685771408'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/graph-of-day-us-airways-domestic.html' title='Graph of Day: Us Airways Domestic Flights in USA'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-3545395518382289707</id><published>2010-04-15T14:56:00.000-07:00</published><updated>2010-04-15T15:01:01.916-07:00</updated><title type='text'>Interesting Layouts - 9 - Twitter Social Network</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.colourlovers.com/uploads/2008/10/465197793_41036dcc3a_o.png"&gt;&lt;img style="cursor: pointer; width: 362px; height: 278px;" src="http://www.colourlovers.com/uploads/2008/10/465197793_41036dcc3a_o.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-3545395518382289707?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/3545395518382289707/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=3545395518382289707' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3545395518382289707'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3545395518382289707'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-9-twitter-social.html' title='Interesting Layouts - 9 - Twitter Social Network'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8039802231894241076</id><published>2010-04-14T14:23:00.000-07:00</published><updated>2010-04-14T14:24:12.614-07:00</updated><title type='text'>Interesting Layouts - 8 - Triangle Free Circle Graph</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Ageev_5X_circle_graph.svg/300px-Ageev_5X_circle_graph.svg.png"&gt;&lt;img style="cursor: pointer; width: 300px; height: 300px;" src="http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Ageev_5X_circle_graph.svg/300px-Ageev_5X_circle_graph.svg.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8039802231894241076?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8039802231894241076/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8039802231894241076' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8039802231894241076'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8039802231894241076'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-8-triangle-free.html' title='Interesting Layouts - 8 - Triangle Free Circle Graph'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-556792285196616096</id><published>2010-04-12T13:27:00.001-07:00</published><updated>2010-04-12T13:27:53.389-07:00</updated><title type='text'>Interesting Layouts - 7 - Radial Layout</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.orbifold.net/default/wp-content/uploads/radiallayout3d.png"&gt;&lt;img style="cursor: pointer; width: 346px; height: 365px;" src="http://www.orbifold.net/default/wp-content/uploads/radiallayout3d.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-556792285196616096?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/556792285196616096/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=556792285196616096' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/556792285196616096'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/556792285196616096'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-7-radial-layout.html' title='Interesting Layouts - 7 - Radial Layout'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4022996131454365559</id><published>2010-04-12T13:22:00.000-07:00</published><updated>2010-04-12T13:23:59.692-07:00</updated><title type='text'>Graph of Day 23: Complete K_n,n Graph</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://altermundus.com/downloads/examples/graph/Complet-16.png"&gt;&lt;img style="cursor: pointer; width: 360px; height: 350px;" src="http://altermundus.com/downloads/examples/graph/Complet-16.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4022996131454365559?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4022996131454365559/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4022996131454365559' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4022996131454365559'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4022996131454365559'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/graph-of-day-23-complete-knn-graph.html' title='Graph of Day 23: Complete K_n,n Graph'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-2979410544281409091</id><published>2010-04-11T02:06:00.000-07:00</published><updated>2010-04-11T02:09:16.324-07:00</updated><title type='text'>Interesting Layouts - 6</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www2.research.att.com/%7Eyifanhu/GIF/Chen@pkustk03.gif"&gt;&lt;img style="cursor: pointer; width: 406px; height: 219px;" src="http://www2.research.att.com/%7Eyifanhu/GIF/Chen@pkustk03.gif" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-2979410544281409091?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/2979410544281409091/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=2979410544281409091' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2979410544281409091'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2979410544281409091'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-6.html' title='Interesting Layouts - 6'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8917023939898015768</id><published>2010-04-10T02:09:00.001-07:00</published><updated>2010-04-10T02:11:45.704-07:00</updated><title type='text'>Interesting Layouts - 5</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.connectedaction.net/wp-content/uploads/2009/09/2009-September-Bernie-Hogan-Facebook-Network-Visualization.png"&gt;&lt;img style="cursor: pointer; width: 395px; height: 388px;" src="http://www.connectedaction.net/wp-content/uploads/2009/09/2009-September-Bernie-Hogan-Facebook-Network-Visualization.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://2006.xmlconference.org/proceedings/127/images/network.gif"&gt;&lt;img style="cursor: pointer; width: 394px; height: 394px;" src="http://2006.xmlconference.org/proceedings/127/images/network.gif" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8917023939898015768?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8917023939898015768/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8917023939898015768' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8917023939898015768'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8917023939898015768'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-5.html' title='Interesting Layouts - 5'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-2909791458980885900</id><published>2010-04-09T04:34:00.001-07:00</published><updated>2010-04-09T04:34:23.266-07:00</updated><title type='text'>Interesting Layouts - 4</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.sg.ethz.ch/research/graphlayout/software_arf.png"&gt;&lt;img style="cursor: pointer; width: 350px; height: 350px;" src="http://www.sg.ethz.ch/research/graphlayout/software_arf.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-2909791458980885900?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/2909791458980885900/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=2909791458980885900' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2909791458980885900'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2909791458980885900'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-4.html' title='Interesting Layouts - 4'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4093521812184581929</id><published>2010-04-08T13:53:00.000-07:00</published><updated>2010-04-08T13:55:20.360-07:00</updated><title type='text'>Interesting Layouts - 3</title><content type='html'>&lt;div style="text-align: center;"&gt;Interesting and confusing :D&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www-vis.lbl.gov/Events/SC04/ImmersiveInfoVisSC04/CIPVis_08-11-04_02.jpg"&gt;&lt;img style="cursor: pointer; width: 394px; height: 293px;" src="http://www-vis.lbl.gov/Events/SC04/ImmersiveInfoVisSC04/CIPVis_08-11-04_02.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4093521812184581929?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4093521812184581929/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4093521812184581929' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4093521812184581929'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4093521812184581929'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-3.html' title='Interesting Layouts - 3'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8935595648885678881</id><published>2010-04-08T02:06:00.001-07:00</published><updated>2010-04-17T11:25:13.093-07:00</updated><title type='text'>Interesting Layouts - 2</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://informationandvisualization.de/files/graph.jpg"&gt;&lt;img style="cursor: pointer; width: 373px; height: 248px;" src="http://informationandvisualization.de/files/graph.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;&lt;br /&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8935595648885678881?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8935595648885678881/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8935595648885678881' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8935595648885678881'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8935595648885678881'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-2.html' title='Interesting Layouts - 2'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-1519384706998683010</id><published>2010-04-07T13:50:00.000-07:00</published><updated>2010-04-07T13:57:28.215-07:00</updated><title type='text'>Interesting Layouts - 1</title><content type='html'>I am trying to give names to the graphs as far as I posted, but in some cases it is really hard to name the graphs. Since the topic of this blog covers "graph days" and "graph layouts", from now on I will start new series of posts as "Interesting Layouts". Here is the first one;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://datamining.typepad.com/data_mining/images/ljviz.png"&gt;&lt;img style="cursor: pointer; width: 356px; height: 313px;" src="http://datamining.typepad.com/data_mining/images/ljviz.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;(Hopefully, I expect that these referenced links will not expire in the future)&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-1519384706998683010?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/1519384706998683010/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=1519384706998683010' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1519384706998683010'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1519384706998683010'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/interesting-layouts-1.html' title='Interesting Layouts - 1'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-5421640999761648635</id><published>2010-04-06T09:04:00.000-07:00</published><updated>2010-04-06T09:08:20.861-07:00</updated><title type='text'>Graph of Day 22: Internet Graph and Map</title><content type='html'>I collected some beautiful layouts from &lt;a href="http://www.visualcomplexity.com"&gt;visualcomplexity.com&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;Opte Project:&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/70_big01.jpg"&gt;&lt;img style="cursor: pointer; width: 400px; height: 300px;" src="http://www.visualcomplexity.com/vc/images/70_big01.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/70_big02.jpg"&gt;&lt;img style="cursor: pointer; width: 400px; height: 300px;" src="http://www.visualcomplexity.com/vc/images/70_big02.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;2009 Global Internet Map:&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/636_big02.jpg"&gt;&lt;img style="cursor: pointer; width: 400px; height: 300px;" src="http://www.visualcomplexity.com/vc/images/636_big02.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/636_big01.jpg"&gt;&lt;img style="cursor: pointer; width: 400px; height: 300px;" src="http://www.visualcomplexity.com/vc/images/636_big01.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-5421640999761648635?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/5421640999761648635/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=5421640999761648635' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5421640999761648635'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5421640999761648635'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/graph-of-day-22-internet-graph-and-map.html' title='Graph of Day 22: Internet Graph and Map'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8337082477132097550</id><published>2010-04-05T04:46:00.000-07:00</published><updated>2010-04-05T04:55:08.941-07:00</updated><title type='text'>Graph of Day 21: Unix Timeline Graph</title><content type='html'>I found the bigger version of &lt;a href="http://tuxtraining.com/wp-content/uploads/2008/10/unix-timeline2.png"&gt;Unix-Timeline Graph&lt;/a&gt;. It is interesting.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8337082477132097550?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8337082477132097550/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8337082477132097550' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8337082477132097550'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8337082477132097550'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/graph-of-day-21-unix-timeline-graph.html' title='Graph of Day 21: Unix Timeline Graph'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4602079287200456610</id><published>2010-04-02T16:16:00.000-07:00</published><updated>2010-04-02T16:17:55.014-07:00</updated><title type='text'>Graph of Day 20: Email Networks</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.cs.usyd.edu.au/%7Evisual/kaixu/images/email-network.PNG"&gt;&lt;img style="cursor: pointer; width: 383px; height: 241px;" src="http://www.cs.usyd.edu.au/%7Evisual/kaixu/images/email-network.PNG" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4602079287200456610?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4602079287200456610/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4602079287200456610' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4602079287200456610'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4602079287200456610'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/graph-of-day-20-email-networks.html' title='Graph of Day 20: Email Networks'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-681598700816084094</id><published>2010-04-01T15:32:00.001-07:00</published><updated>2010-04-01T15:33:47.483-07:00</updated><title type='text'>Graph of Day 20: Scale Free Network Generated by Barabasi-Albert Model</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Barabasi_Albert_1000nodes.png/656px-Barabasi_Albert_1000nodes.png"&gt;&lt;img style="cursor: pointer; width: 357px; height: 325px;" src="http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Barabasi_Albert_1000nodes.png/656px-Barabasi_Albert_1000nodes.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-681598700816084094?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/681598700816084094/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=681598700816084094' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/681598700816084094'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/681598700816084094'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/04/graph-of-day-20-scale-free-network.html' title='Graph of Day 20: Scale Free Network Generated by Barabasi-Albert Model'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-6790487532681872065</id><published>2010-03-31T00:49:00.000-07:00</published><updated>2010-03-31T00:58:08.177-07:00</updated><title type='text'>Graph of Day 19: Worldcup Visualizations</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.cs.usyd.edu.au/%7Evisual/kaixu/images/worldcup1.png"&gt;&lt;img style="cursor: pointer; width: 308px; height: 204px;" src="http://www.cs.usyd.edu.au/%7Evisual/kaixu/images/worldcup1.png" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;I found &lt;a href="http://www.cs.usyd.edu.au/%7Evisual/kaixu/papers/kaixu_vinci09_worldcup.pdf"&gt;interesting studies&lt;/a&gt; of some research group. They visualize world cup history according to some semantics like participations, success etc. using graph layouts.&lt;br /&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.cs.usyd.edu.au/%7Evisual/kaixu/images/worldcup-hierarchy_all.PNG"&gt;&lt;img style="cursor: pointer; width: 378px; height: 175px;" src="http://www.cs.usyd.edu.au/%7Evisual/kaixu/images/worldcup-hierarchy_all.PNG" alt="" border="0" /&gt;&lt;/a&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-6790487532681872065?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/6790487532681872065/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=6790487532681872065' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6790487532681872065'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6790487532681872065'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-19-worldcup-visualizations.html' title='Graph of Day 19: Worldcup Visualizations'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8033912479046150785</id><published>2010-03-30T11:40:00.000-07:00</published><updated>2010-03-30T11:43:35.391-07:00</updated><title type='text'>Visual Web Mining</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.cs.rpi.edu/%7Eyoussefi/research/VWM/images/thumbs/si_t.jpg"&gt;&lt;img style="cursor: pointer; width: 120px; height: 120px;" src="http://www.cs.rpi.edu/%7Eyoussefi/research/VWM/images/thumbs/si_t.jpg" alt="" border="0" /&gt;&lt;/a&gt;  &lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.cs.rpi.edu/%7Eyoussefi/research/VWM/images/thumbs/overh1.jpg"&gt;&lt;img style="cursor: pointer; width: 97px; height: 130px;" src="http://www.cs.rpi.edu/%7Eyoussefi/research/VWM/images/thumbs/overh1.jpg" alt="" border="0" /&gt;&lt;/a&gt;  &lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.cs.rpi.edu/%7Eyoussefi/research/VWM/images/thumbs/sin.jpg"&gt;&lt;img style="cursor: pointer; width: 139px; height: 130px;" src="http://www.cs.rpi.edu/%7Eyoussefi/research/VWM/images/thumbs/sin.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;br /&gt;&lt;br /&gt;During the Internet surfing, found a research website with interesting screens. They aim to visualize the web using appropriate mining techniques. Some of &lt;a href="http://www.cs.rpi.edu/%7Eyoussefi/research/VWM/"&gt;their results&lt;/a&gt; are confusing but seems to be beautiful.&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.cs.rpi.edu/%7Eyoussefi/research/VWM/images/thumbs/sin.jpg"&gt;&lt;br /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8033912479046150785?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8033912479046150785/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8033912479046150785' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8033912479046150785'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8033912479046150785'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/visual-web-mining.html' title='Visual Web Mining'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-584716532807881691</id><published>2010-03-30T10:52:00.000-07:00</published><updated>2010-03-30T10:54:24.608-07:00</updated><title type='text'>Graph of Day 18: Network of Electronic Devices</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://lab.kapit.fr/download/attachments/32276481/kap-lab-orthogonal-2.png"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 402px; height: 255px;" src="http://lab.kapit.fr/download/attachments/32276481/kap-lab-orthogonal-2.png" alt="" border="0" /&gt;&lt;/a&gt;Network of electronic devices visualized with orthogonal layout.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-584716532807881691?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/584716532807881691/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=584716532807881691' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/584716532807881691'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/584716532807881691'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-18-network-of-electronic.html' title='Graph of Day 18: Network of Electronic Devices'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8470321276978387175</id><published>2010-03-29T14:44:00.000-07:00</published><updated>2010-03-29T14:47:17.903-07:00</updated><title type='text'>Graph of Day 17: Political Networks</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/538_big01.jpg"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 400px; height: 300px;" src="http://www.visualcomplexity.com/vc/images/538_big01.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;They have chosen American politics visualized using Radial-Circular layout.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8470321276978387175?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8470321276978387175/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8470321276978387175' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8470321276978387175'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8470321276978387175'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-17-political-networks.html' title='Graph of Day 17: Political Networks'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-5694807604727782217</id><published>2010-03-28T01:59:00.000-07:00</published><updated>2010-03-28T02:08:04.458-07:00</updated><title type='text'>Graph of Day 16: PPI Network 2</title><content type='html'>Recently, I try to propose a new model for the visualization of PPI networks. The main problem of the model is how to collect subgraphs and how to visualize. There are over 165000 interactions meaning edges and over 6000 nodes. I do not want to code existing algorithms since then the production of subgraphs are done with C++ using OGDF. Interestingly, one of the subgraphs has the property of very high disconnectivity.  Here are my first snapshots using Circular and Symmetric layouts in GDE graph editor.&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://4.bp.blogspot.com/_cZYY5GrM584/S68b7c6V_rI/AAAAAAAAARo/BRKTffSvZYc/s1600/BIOGRID-Saccharomyces_cerevisiae-Affinity_Capture-MS17_circular.jpg"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 320px; height: 192px;" src="http://4.bp.blogspot.com/_cZYY5GrM584/S68b7c6V_rI/AAAAAAAAARo/BRKTffSvZYc/s320/BIOGRID-Saccharomyces_cerevisiae-Affinity_Capture-MS17_circular.jpg" alt="" id="BLOGGER_PHOTO_ID_5453608381956095666" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;Circular&lt;/div&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://2.bp.blogspot.com/_cZYY5GrM584/S68cRKdMzcI/AAAAAAAAARw/8PUBGQ71lZg/s1600/BIOGRID-Saccharomyces_cerevisiae-Affinity_Capture-MS17_symetric.jpg"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 320px; height: 194px;" src="http://2.bp.blogspot.com/_cZYY5GrM584/S68cRKdMzcI/AAAAAAAAARw/8PUBGQ71lZg/s320/BIOGRID-Saccharomyces_cerevisiae-Affinity_Capture-MS17_symetric.jpg" alt="" id="BLOGGER_PHOTO_ID_5453608754959142338" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;Symmetric&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-5694807604727782217?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/5694807604727782217/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=5694807604727782217' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5694807604727782217'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5694807604727782217'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-16-ppi-network-2.html' title='Graph of Day 16: PPI Network 2'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://4.bp.blogspot.com/_cZYY5GrM584/S68b7c6V_rI/AAAAAAAAARo/BRKTffSvZYc/s72-c/BIOGRID-Saccharomyces_cerevisiae-Affinity_Capture-MS17_circular.jpg' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8180398170387048085</id><published>2010-03-27T15:09:00.000-07:00</published><updated>2010-03-27T15:10:31.575-07:00</updated><title type='text'>Graph of Day 15: Map of Science as Graph</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/659_big01.jpg"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 400px; height: 300px;" src="http://www.visualcomplexity.com/vc/images/659_big01.jpg" alt="" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8180398170387048085?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8180398170387048085/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8180398170387048085' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8180398170387048085'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8180398170387048085'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-15-map-of-science-as-graph.html' title='Graph of Day 15: Map of Science as Graph'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-6488385091763346783</id><published>2010-03-27T02:15:00.001-07:00</published><updated>2010-03-27T02:20:31.142-07:00</updated><title type='text'>Graph of Day 15: The Human Disease Network</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.visualcomplexity.com/vc/images/686_big01.jpg"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 400px; height: 300px;" src="http://www.visualcomplexity.com/vc/images/686_big01.jpg" alt="" border="0" /&gt;&lt;/a&gt;Today, I decide to show you different graph, disease network of human is extracted using the tool &lt;a href="http://diseasome.eu/map.html"&gt;Diseasome&lt;/a&gt;. It is really interesting.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-6488385091763346783?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/6488385091763346783/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=6488385091763346783' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6488385091763346783'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6488385091763346783'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-15-human-disease-network.html' title='Graph of Day 15: The Human Disease Network'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4304234706818062773</id><published>2010-03-26T01:58:00.000-07:00</published><updated>2010-03-26T02:08:36.605-07:00</updated><title type='text'>Graph of Day 14: Hierarchical Graphs and Trees</title><content type='html'>Drawing the graph in hierarchic way is well studied drawing paradigm. Sugiyama frameworks and its variants, its each steps are well studied. It is applicable for both drawing graphs and trees.&lt;br /&gt;&lt;br /&gt;The most famous tool for obtaining hierarchic graphs is to use graphviz dot program. The samples are;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://1.bp.blogspot.com/_cZYY5GrM584/S6x4A-qHCII/AAAAAAAAARg/FHSj0FdFz3I/s1600/grammer.bmp"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 320px; height: 320px;" src="http://1.bp.blogspot.com/_cZYY5GrM584/S6x4A-qHCII/AAAAAAAAARg/FHSj0FdFz3I/s320/grammer.bmp" alt="" id="BLOGGER_PHOTO_ID_5452865207053781122" border="0" /&gt;&lt;/a&gt;Grammer tree(Theory of Computation) for a context free languages,&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://2.bp.blogspot.com/_cZYY5GrM584/S6x36UN6yMI/AAAAAAAAARY/VjcPK2L9520/s1600/unix.bmp"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 320px; height: 251px;" src="http://2.bp.blogspot.com/_cZYY5GrM584/S6x36UN6yMI/AAAAAAAAARY/VjcPK2L9520/s320/unix.bmp" alt="" id="BLOGGER_PHOTO_ID_5452865092582033602" border="0" /&gt;&lt;/a&gt;Unix history graph.&lt;br /&gt;&lt;br /&gt;As well as dot program, you can use Yed, GoVisual Diagram Editor, Robinviz, Cytoscape and DaVinci tools  to draw these types of graphs. You can also use specific libraries OGDF, LEDA, JGraph etc.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4304234706818062773?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4304234706818062773/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4304234706818062773' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4304234706818062773'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4304234706818062773'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-14-hierarchical-graphs-and.html' title='Graph of Day 14: Hierarchical Graphs and Trees'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://1.bp.blogspot.com/_cZYY5GrM584/S6x4A-qHCII/AAAAAAAAARg/FHSj0FdFz3I/s72-c/grammer.bmp' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-3896576410507284508</id><published>2010-03-24T14:28:00.001-07:00</published><updated>2010-03-24T14:38:43.248-07:00</updated><title type='text'>Graph of Day 13: Regularity Network</title><content type='html'>Today's graph is regularity network. It is one level of looking biological relevance.&lt;br /&gt;&lt;br /&gt;They would be very dense, and I obtain one of Biomed journal &lt;a href="http://www.biomedcentral.com/content/pdf/1752-0509-2-31.pdf"&gt;papers&lt;/a&gt;.&lt;br /&gt;&lt;br /&gt;You can see this huge graph &lt;a href="http://www.biomedcentral.com/content/supplementary/1752-0509-2-31-s5.jpeg"&gt;here&lt;/a&gt;.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-3896576410507284508?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/3896576410507284508/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=3896576410507284508' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3896576410507284508'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3896576410507284508'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-13-regularity-network.html' title='Graph of Day 13: Regularity Network'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-6828897827974630006</id><published>2010-03-22T13:25:00.000-07:00</published><updated>2010-03-22T13:41:44.923-07:00</updated><title type='text'>Graph of Day 12: Railroad and Metro Maps as Graph</title><content type='html'>We posted a topic about airline routes as graphs showing the changes in time before. Today, I would like to post similar graphs. Especially, metro maps as graphs are used widely and several research paper published before in leading conferences like Graph Drawing. To draw these graphs, sometimes we draw as it is. For instance, Istanbul metro map, it is not too complicated,&lt;br /&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://4.bp.blogspot.com/_cZYY5GrM584/S6fTR28HijI/AAAAAAAAAQ8/yuisjCH-ZjM/s1600-h/Istanbul_Rapid_Transit_Map.png"&gt;&lt;img style="cursor: pointer; width: 320px; height: 202px;" src="http://4.bp.blogspot.com/_cZYY5GrM584/S6fTR28HijI/AAAAAAAAAQ8/yuisjCH-ZjM/s320/Istanbul_Rapid_Transit_Map.png" alt="" id="BLOGGER_PHOTO_ID_5451558177714178610" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;br /&gt;but, railroad map of the entire Europe and its graph is more complicated;&lt;br /&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://1.bp.blogspot.com/_cZYY5GrM584/S6fTxAC7o1I/AAAAAAAAARE/-EJoqpTHdEM/s1600-h/High_Speed_Railroad_Map_Europe_2009.gif"&gt;&lt;img style="cursor: pointer; width: 320px; height: 235px;" src="http://1.bp.blogspot.com/_cZYY5GrM584/S6fTxAC7o1I/AAAAAAAAARE/-EJoqpTHdEM/s320/High_Speed_Railroad_Map_Europe_2009.gif" alt="" id="BLOGGER_PHOTO_ID_5451558712734622546" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;br /&gt;There are also metro maps with good visualizations. For instance, New York metro map as a snapshot:&lt;br /&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://2.bp.blogspot.com/_cZYY5GrM584/S6fUK34VOZI/AAAAAAAAARM/9Qk3PtcjESo/s1600-h/267_big01.jpg"&gt;&lt;img style="cursor: pointer; width: 320px; height: 240px;" src="http://2.bp.blogspot.com/_cZYY5GrM584/S6fUK34VOZI/AAAAAAAAARM/9Qk3PtcjESo/s320/267_big01.jpg" alt="" id="BLOGGER_PHOTO_ID_5451559157219277202" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;br /&gt;Producing these graphs and finding some semantics to give importance such as number of passengers, number of freight wagons, number of train routes and showing in the map would be meaningful to analyze the railways. Even, it would be useful to estimate on which route should be invested to utilize more.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-6828897827974630006?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/6828897827974630006/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=6828897827974630006' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6828897827974630006'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6828897827974630006'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-12-railroad-and-metro-maps.html' title='Graph of Day 12: Railroad and Metro Maps as Graph'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://4.bp.blogspot.com/_cZYY5GrM584/S6fTR28HijI/AAAAAAAAAQ8/yuisjCH-ZjM/s72-c/Istanbul_Rapid_Transit_Map.png' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-710209325937627380</id><published>2010-03-21T02:38:00.000-07:00</published><updated>2010-03-21T03:39:33.595-07:00</updated><title type='text'>Graph of Day 11: Protein bound tree</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://1.bp.blogspot.com/_cZYY5GrM584/S6X0Mjr7IQI/AAAAAAAAAQk/wDAbXOyhCkE/s1600-h/p3d3.jpg"&gt;&lt;img style="margin: 0pt 0pt 10px 10px; float: right; cursor: pointer; width: 232px; height: 116px;" src="http://1.bp.blogspot.com/_cZYY5GrM584/S6X0Mjr7IQI/AAAAAAAAAQk/wDAbXOyhCkE/s200/p3d3.jpg" alt="" id="BLOGGER_PHOTO_ID_5451031420576932098" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;Recently, I attend Chemical Engineering course which is related to bioinformatics and computational biology. It is closer to chemical engineering perspective but also professor tends to integrate our perspective which is almost zero knowledge about some topics :). Protein is formed by amino acids, and each protein is the product of sequence on the genome.&lt;br /&gt;&lt;br /&gt;I obtain one protein from &lt;a href="http://www.pdb.org/"&gt;PDB&lt;/a&gt;,  and using matlab, I visualize the protein( 2WTT: P73 Tumor Protein). Interestingly it is a tree structure with atoms and bounds( Figure on the right above ).&lt;br /&gt;&lt;br /&gt;Then, when we form complex structure in the form of several proteins. This time we obtain graphs that is formed with several trees. I don't know do people work on it, but analyzing the graphs would be an alternative to sequence matching algorithms. Maybe in the near future, I will have better understanding on these topics.&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;Same protein with apha helixes;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://4.bp.blogspot.com/_cZYY5GrM584/S6X2DKlgxWI/AAAAAAAAAQs/HduWvRvq57Y/s1600-h/p3d2.jpg"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 234px; height: 84px;" src="http://4.bp.blogspot.com/_cZYY5GrM584/S6X2DKlgxWI/AAAAAAAAAQs/HduWvRvq57Y/s200/p3d2.jpg" alt="" id="BLOGGER_PHOTO_ID_5451033458243585378" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;And just amino acids with different colors;&lt;br /&gt;&lt;br /&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://3.bp.blogspot.com/_cZYY5GrM584/S6X2mvAJyfI/AAAAAAAAAQ0/gU4CCCNTK1Q/s1600-h/p3d.jpg"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 200px; height: 100px;" src="http://3.bp.blogspot.com/_cZYY5GrM584/S6X2mvAJyfI/AAAAAAAAAQ0/gU4CCCNTK1Q/s200/p3d.jpg" alt="" id="BLOGGER_PHOTO_ID_5451034069314423282" border="0" /&gt;&lt;/a&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-710209325937627380?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/710209325937627380/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=710209325937627380' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/710209325937627380'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/710209325937627380'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-11-protein-bound-tree-from.html' title='Graph of Day 11: Protein bound tree'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://1.bp.blogspot.com/_cZYY5GrM584/S6X0Mjr7IQI/AAAAAAAAAQk/wDAbXOyhCkE/s72-c/p3d3.jpg' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4969064423904181055</id><published>2010-03-20T14:36:00.001-07:00</published><updated>2010-03-20T16:07:45.486-07:00</updated><title type='text'>Reasons to watch 22 men and one ball</title><content type='html'>Today, I would like to comment on today's Football game something out of topic of this blog. Actually, it is classic but football is not just a game, it is almost passion for every teenage boys even for girls sometimes. It is also passion for me to watch a football game. The simplicity of the game is apparent; 22 players and one ball, it is like a real time chess. Each teams respond to the opponent team moves while making their own moves as well. I don't know why people start playing football but I believe that the aim is changed a lot and it is not simple as I guess. Did the first football player start playing if he(probably a male , I guess)  could see the today's football game? People are going mad in stadiums. We always say that Roman's Ancient Arenas were barbaric, but even now football stadiums could be similar to those arenas.  People may die during the matches, players may get hurt and supporters may throw up some pennies to the head of referees.  Can you believe that a player may be whistled when it is injured? Do we lose our emotions during the game? In 17 th century, people in Italy, use their mask to hide their identities. Today in stadiums, people do not have masks but they feel free to behave to different. Intentionally, they swear, whistle,  shout, fight... Interestingly, as a supporter, we proudly hang some posters to stands as "Welcome to Hell". As I said, we are going far away from simple football game. We increase hospitality although we try to spread a phrase "fair play".  Think about the national matches. It is one type of modern wars.&lt;br /&gt;&lt;br /&gt;In a conclusion, no matter which happens in the game, I believe we could not give up being interested in football, watching the game, proudly talking about the victories and counting cups. One interesting and bizarre point that comes in my mind is about the number of cups. Do you believe that in Turkcell Super League over 50 seasons, one of the leading team Fenerbahçe(my favorite team as well) has 17 league champions cup. What will happen in 2510? Will we proudly say we have won 17x11 cups( assuming to have same ratio 17/50)? Will we able to? Can you imagine the lifetime of football game? Will human kind reproduce another game? Obviously, who has read that entry in 2010 may not see the next century but I hope today's football  will remain with better "fair play" understanding.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4969064423904181055?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4969064423904181055/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4969064423904181055' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4969064423904181055'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4969064423904181055'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/reasons-to-watch-22-men-and-one-ball.html' title='Reasons to watch 22 men and one ball'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-3344848170560683974</id><published>2010-03-20T01:43:00.000-07:00</published><updated>2010-03-20T01:52:25.625-07:00</updated><title type='text'>Graph of Day 10: Air Traffic Graph</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://www.crashposition.com/blog/images/time/AirTraffic_vs_Time.jpg"&gt;&lt;img style="margin: 0px auto 10px; display: block; text-align: center; cursor: pointer; width: 320px; height: 240px;" src="http://2.bp.blogspot.com/_cZYY5GrM584/S6SLL20obqI/AAAAAAAAAQc/mzn--3nRDhU/s320/AirTraffic_vs_Time.jpg" alt="" id="BLOGGER_PHOTO_ID_5450634484836232866" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;Air traffic graphs are special graphs. There are some visualization methodologies and effort to manage air traffic using these visualizations. Recently, we have more information about US air traffic graphs and we can easily find good graphs and its visualizations. These graphs are perfect for macro view of traffic.&lt;br /&gt;&lt;br /&gt;Visualization techniques of these graphs generally rely on determined node positions and curved edges.  Generally, edge clustering is done. In the literature, you can easily detect several research paper about the visualization of air traffic.&lt;br /&gt;&lt;br /&gt;Futhermore, rather than graphs and its visualizations, there are also computational geometry approaches to manage air routes, attitudes, etc. These are also challenging research areas.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-3344848170560683974?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/3344848170560683974/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=3344848170560683974' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3344848170560683974'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3344848170560683974'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-9-air-traffic-graph.html' title='Graph of Day 10: Air Traffic Graph'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://2.bp.blogspot.com/_cZYY5GrM584/S6SLL20obqI/AAAAAAAAAQc/mzn--3nRDhU/s72-c/AirTraffic_vs_Time.jpg' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8898474742807813491</id><published>2010-03-18T17:20:00.000-07:00</published><updated>2010-03-20T01:53:06.326-07:00</updated><title type='text'>Graph of Day 9: Hairball</title><content type='html'>&lt;div style="text-align: center;"&gt;&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://3.bp.blogspot.com/_cZYY5GrM584/S6LDyUyVtXI/AAAAAAAAAQU/K-MXzQQGqc8/s1600-h/humanProteinInteractionNetwork.jpeg"&gt;&lt;img style="margin: 0pt 10px 10px 0pt; float: left; cursor: pointer; width: 320px; height: 226px;" src="http://3.bp.blogspot.com/_cZYY5GrM584/S6LDyUyVtXI/AAAAAAAAAQU/K-MXzQQGqc8/s320/humanProteinInteractionNetwork.jpeg" alt="" id="BLOGGER_PHOTO_ID_5450133768412444018" border="0" /&gt;&lt;/a&gt;&lt;br /&gt;&lt;/div&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;div style="text-align: center;"&gt;&lt;br /&gt;&lt;/div&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;&lt;br /&gt;Some graph visualizations may turn into "hairball" ( in Turkish: Saç yumağı) when the corresponding graph is too dense. The graph at the side is human protein-protein interactions graphs.  Over 25000 genes and its corresponding product protein exist in Human. Its interactions which corresponds to edges are even more than 100000 depending on the interaction types. BIOGRID is one the database that I knew for the PPI networks. Finally, the aim of the visualization system should be rescuing from this hairball results.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8898474742807813491?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8898474742807813491/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8898474742807813491' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8898474742807813491'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8898474742807813491'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-9-hairball.html' title='Graph of Day 9: Hairball'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://3.bp.blogspot.com/_cZYY5GrM584/S6LDyUyVtXI/AAAAAAAAAQU/K-MXzQQGqc8/s72-c/humanProteinInteractionNetwork.jpeg' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-3731950710092502675</id><published>2010-03-17T14:34:00.000-07:00</published><updated>2010-03-17T14:53:30.902-07:00</updated><title type='text'>Graph of Day 8: Level by Level Visualization</title><content type='html'>Today, I would like to mention about the graph abstraction and visualization with several levels. We are now able to visualize the huge graphs at one window. There are some examples which were posted before like the Internet Graph. However, when you look at the whole layout, you could not easily detect useful semantics which is too complicated to understand.  So we need an abstraction or visualize within the levels methodology in order to give both details and general perspective.&lt;br /&gt;&lt;br /&gt;Abstraction can be done in several ways. One way is clustering. Clustering may occur due to the nature of the graph or it may be done intentionally. One of the widely used algorithm is &lt;a href="http://micans.org/mcl/"&gt;MCL(Markov Clustering Algorithm)&lt;/a&gt; and publicly available.  This clustering can be useful to divide the graph into pieces. Furthermore, one can use some filtering methodologies to relax the layout production and view.&lt;br /&gt;&lt;br /&gt;Also, visualization within levels is also important. When you level the problem, you can use different layouts for different levels in order to make the visualization semantically. In &lt;a href="http://code.google.com/p/robinviz/"&gt;Robinviz&lt;/a&gt; we have done this methodology. We proposed a visualization solution for biclustering using another paradigm called Protein-Protein Interactions network. One central view shows the relations between biclusters and peripheral views shows the corresponding PPI graph.&lt;br /&gt;&lt;br /&gt;It is also interesting fact that biological interaction data has also several levels. PPI's are one aspect. The lower aspect molecular interactions which I am now working on their visualizations, is also at one level depth.&lt;br /&gt;&lt;br /&gt;Anyway, the total visualization system for these interactions using graph drawing is exciting research that could be perfect for biologist :). However, it is really though business.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-3731950710092502675?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/3731950710092502675/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=3731950710092502675' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3731950710092502675'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3731950710092502675'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-8-level-by-level.html' title='Graph of Day 8: Level by Level Visualization'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8549398818118458930</id><published>2010-03-16T01:12:00.000-07:00</published><updated>2010-03-16T01:30:08.200-07:00</updated><title type='text'>Graph of Day 7: Biological Networks and Cytoscape</title><content type='html'>Biological networks have several types such as Protein Protein Interaction networks, Molecular Interaction Networks, Regulatory Networks etc. Then after 2000 with the increase in both network numbers and sizes, the new society emerged whom have concentrated on these networks especially originated from graph visualization and drawing researchers.&lt;br /&gt;&lt;br /&gt;One of the main tool is Cytoscape. It is well supported and widely used. There are some other tools among them we also provide a tool for the visualization of biclusters and protein-protein interaction networks which is called &lt;a href="http://code.google.com/p/robinviz/"&gt;robinviz&lt;/a&gt;.&lt;br /&gt;&lt;br /&gt;The sample ppi graph using Cytoscape can be found &lt;a href="http://cbio.ensmp.fr/proj/graphm_ppi/yeast.intr_small_v2.jpg"&gt;here&lt;/a&gt;.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8549398818118458930?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8549398818118458930/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8549398818118458930' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8549398818118458930'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8549398818118458930'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-7-biological-networks-and.html' title='Graph of Day 7: Biological Networks and Cytoscape'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-256539646138934896</id><published>2010-03-15T06:35:00.000-07:00</published><updated>2010-03-15T06:47:32.150-07:00</updated><title type='text'>Graph of Day 6: Social Networks and Analysis</title><content type='html'>Today I would like to mention about the graphs of social networks. Social network graphs could have some interesting property that could not easily be generated by random graph generators. There are so many tools and graphs for both academic researches and business challenges. The one that I know is &lt;a href="http://vlado.fmf.uni-lj.si/pub/networks/pajek/"&gt;Pajek&lt;/a&gt; and it is widely used. I guess that it is free but there are also commercial tools for both analysis and visualization. For example, &lt;a href="http://www.fmsasg.com/SocialNetworkAnalysis/"&gt;Sentinel Visualizer&lt;/a&gt; is one of them and the graph of today is &lt;a href="http://www.fmsasg.com/SocialNetworkAnalysis/SocialNetworkAnalysis_Graph.gif"&gt;here&lt;/a&gt;.&lt;br /&gt;&lt;br /&gt;There is still much more work to do. Especially due to the availability of social structures like facebook, twitter, I believe that visualization would take increasing attention in research community.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-256539646138934896?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/256539646138934896/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=256539646138934896' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/256539646138934896'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/256539646138934896'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-6-social-networks-and.html' title='Graph of Day 6: Social Networks and Analysis'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-6036397402528326415</id><published>2010-03-10T13:45:00.000-08:00</published><updated>2010-03-10T13:56:37.636-08:00</updated><title type='text'>Graph of Day 5: Small World Graph; visualized with Radial Layout</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://3.bp.blogspot.com/_cZYY5GrM584/S5gUo20ldRI/AAAAAAAAAQM/MLL3HROtZpY/s1600-h/graphday5.jpg"&gt;&lt;img style="float:left; margin:0 10px 10px 0;cursor:pointer; cursor:hand;width: 320px; height: 299px;" src="http://3.bp.blogspot.com/_cZYY5GrM584/S5gUo20ldRI/AAAAAAAAAQM/MLL3HROtZpY/s320/graphday5.jpg" border="0" alt=""id="BLOGGER_PHOTO_ID_5447126441448011026" /&gt;&lt;/a&gt;&lt;br /&gt;Radial Layouts are special drawing of graphs, that show both hierarchy and centrality. It is like a Sugiyama framework and in one of the published papers, I have seen the radial adaptation of this framework. The aim of radial layouts is to draw graph by introducing layers for the graph and drawing each layer on a circle with less crossings and less bends.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-6036397402528326415?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/6036397402528326415/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=6036397402528326415' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6036397402528326415'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6036397402528326415'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-5-small-world-graph.html' title='Graph of Day 5: Small World Graph; visualized with Radial Layout'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://3.bp.blogspot.com/_cZYY5GrM584/S5gUo20ldRI/AAAAAAAAAQM/MLL3HROtZpY/s72-c/graphday5.jpg' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-6209886636633358142</id><published>2010-03-09T12:42:00.000-08:00</published><updated>2010-03-09T12:49:02.270-08:00</updated><title type='text'>Graph of Day 4: Small World Graph; visualized with sugiyama framework</title><content type='html'>&lt;a onblur="try {parent.deselectBloggerImageGracefully();} catch(e) {}" href="http://1.bp.blogspot.com/_cZYY5GrM584/S5azbayjZsI/AAAAAAAAAQE/ocWKvfKcb2w/s1600-h/graphdy4.jpg"&gt;&lt;img style="float:left; margin:0 10px 10px 0;cursor:pointer; cursor:hand;width: 320px; height: 173px;" src="http://1.bp.blogspot.com/_cZYY5GrM584/S5azbayjZsI/AAAAAAAAAQE/ocWKvfKcb2w/s320/graphdy4.jpg" border="0" alt=""id="BLOGGER_PHOTO_ID_5446738082980390594" /&gt;&lt;/a&gt; Small world graphs are also special graphs. Especially, rather than graph drawings, it is widely used in order to model communities in complex systems. The graph in the picture is created using VisOne tool which is available as binary executable. You can test just creating a small world graph and then run layered layout based on sugiyama framework.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-6209886636633358142?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/6209886636633358142/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=6209886636633358142' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6209886636633358142'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6209886636633358142'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-4-small-world-graph.html' title='Graph of Day 4: Small World Graph; visualized with sugiyama framework'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><media:thumbnail xmlns:media='http://search.yahoo.com/mrss/' url='http://1.bp.blogspot.com/_cZYY5GrM584/S5azbayjZsI/AAAAAAAAAQE/ocWKvfKcb2w/s72-c/graphdy4.jpg' height='72' width='72'/><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-5005777641171509006</id><published>2010-03-08T10:35:00.000-08:00</published><updated>2010-03-08T10:43:43.492-08:00</updated><title type='text'>Graph of Day 3: The Internet Graph</title><content type='html'>I don't know why we need so large graphs but the interesting thing is that we have also the graph of the Internet. Can you imagine the number of nodes? Even more interesting some people are tried to visualize these graphs. &lt;br /&gt;&lt;br /&gt;You really need a good computation power or you need to model abstraction of the whole graph. Luckily, we have some graph clustering methods and we are able to manipulate visual clues, using the current research.&lt;br /&gt;&lt;br /&gt;One sample graph can be found &lt;a href="http://en.wikipedia.org/wiki/File:Internet_map_1024.jpg"&gt;here&lt;/a&gt;.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-5005777641171509006?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/5005777641171509006/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=5005777641171509006' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5005777641171509006'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5005777641171509006'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-3-internet-graph.html' title='Graph of Day 3: The Internet Graph'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-7132439962540777559</id><published>2010-03-07T02:10:00.001-08:00</published><updated>2010-03-07T02:17:38.521-08:00</updated><title type='text'>Graph of Day 2: Clustered Orthogonal Graph</title><content type='html'>Orthogonal Graphs are interesting graph types. I am able to work on some orthogonal graphs due to my research project. I am not able to go further beyond the application but they are widely used in VLSI design, biological pathway drawings etc.&lt;br /&gt;&lt;br /&gt;Clustered means it gives an importance to draw clusters close during the drawing. To begin the theory you can follow this &lt;a href="http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.34.7049"&gt;link&lt;/a&gt; and to try you can install &lt;a href="http://www.oreas.com/layouts_en.php"&gt;Go Visual Diagram Editor&lt;/a&gt;&lt;br /&gt;&lt;br /&gt;And the graph of today is&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:528px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100307100947-afb8975467a442ce871e0142b74a6fb2&amp;amp;docName=graph_day2&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Graph%20Day2&amp;amp;et=1267956769360&amp;amp;er=19" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:528px" flashvars="mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100307100947-afb8975467a442ce871e0142b74a6fb2&amp;amp;docName=graph_day2&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Graph%20Day2&amp;amp;et=1267956769360&amp;amp;er=19" /&gt;&lt;/object&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-7132439962540777559?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/7132439962540777559/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=7132439962540777559' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7132439962540777559'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7132439962540777559'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-2-clustered-orthogonal.html' title='Graph of Day 2: Clustered Orthogonal Graph'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-1175576992863741252</id><published>2010-03-06T02:38:00.001-08:00</published><updated>2010-03-06T02:44:15.050-08:00</updated><title type='text'>Graph of Day 1: GO Graph</title><content type='html'>Recently, I have decided to publish some graphs that I worked in the past and might I work in the future. The first graph is related to bioinformatics. You can obtain similar one using these &lt;a href="http://bioinfo.vanderbilt.edu/gotm/goanalysis_page_one.php"&gt;web based application&lt;/a&gt;. Interestingly, GO categories has a graph eventually. It is hierarchical. The parent node is the super-set of its leaf nodes meaning that each genes in leaf nodes are also inside the parent nodes.&lt;br /&gt;&lt;br /&gt;Sample graph is below;&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:247px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100306103457-adf19d9662f74c1eba6053fdc5e4d870&amp;amp;docName=graph_day1&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Graph%20of%20day%201&amp;amp;et=1267871772648&amp;amp;er=46" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:247px" flashvars="mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100306103457-adf19d9662f74c1eba6053fdc5e4d870&amp;amp;docName=graph_day1&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Graph%20of%20day%201&amp;amp;et=1267871772648&amp;amp;er=46" /&gt;&lt;/object&gt; &lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-1175576992863741252?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/1175576992863741252/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=1175576992863741252' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1175576992863741252'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1175576992863741252'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/03/graph-of-day-1-go-graph.html' title='Graph of Day 1: GO Graph'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-1789733169464233527</id><published>2010-01-22T03:23:00.000-08:00</published><updated>2010-01-22T03:30:26.195-08:00</updated><title type='text'>XML Streams for Probabilistic Databases</title><content type='html'>This semester, in terms of number of project posted, is the most productive semester of mine :). At this report, I presented a method for XML streams coming through the environment to our database system. These streams are also probabilistic as well, that means you can not infere knowledge before the incoming data. The presented method and brief survey is given at the following report;&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:272px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100122112307-7b7fe01b92d747eb8bd21ecf72edf9cc&amp;amp;docName=report_db&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=XML%20Streams%20for%20Probabilistic%20Databases&amp;amp;et=1264159811874&amp;amp;er=29" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:272px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100122112307-7b7fe01b92d747eb8bd21ecf72edf9cc&amp;amp;docName=report_db&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=XML%20Streams%20for%20Probabilistic%20Databases&amp;amp;et=1264159811874&amp;amp;er=29" /&gt;&lt;/object&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-1789733169464233527?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/1789733169464233527/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=1789733169464233527' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1789733169464233527'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1789733169464233527'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/01/xml-streams-for-probabilistic-databases.html' title='XML Streams for Probabilistic Databases'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-1217823372767443142</id><published>2010-01-22T03:16:00.000-08:00</published><updated>2010-01-22T03:19:56.507-08:00</updated><title type='text'>Comparison of Sensor Network Routing Algorithms; Flooding, Gossiping, Rumor Routing</title><content type='html'>At this semester, I have taken Sensor Networks course and as a final project professor asked me to compare well known three sensor network routing algorithms. I wrote a brief survey and showed comparison plots as well.&lt;br /&gt;&lt;br /&gt;Here is the report,&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:272px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100122111611-d76ffb82a4d94c27b5420197787425c9&amp;amp;docName=report&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Comparison%20of%20Sensor%20Network%20Routing%20Algorithms&amp;amp;et=1264159181043&amp;amp;er=81" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:272px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100122111611-d76ffb82a4d94c27b5420197787425c9&amp;amp;docName=report&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Comparison%20of%20Sensor%20Network%20Routing%20Algorithms&amp;amp;et=1264159181043&amp;amp;er=81" /&gt;&lt;/object&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-1217823372767443142?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/1217823372767443142/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=1217823372767443142' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1217823372767443142'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1217823372767443142'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/01/comparison-of-sensor-network-routing.html' title='Comparison of Sensor Network Routing Algorithms; Flooding, Gossiping, Rumor Routing'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-6166687107292343950</id><published>2010-01-16T17:22:00.000-08:00</published><updated>2010-01-16T17:32:39.678-08:00</updated><title type='text'>Digital Organism and Reasons for Cancer Cells</title><content type='html'>As a term project for one of my courses lectured by H. Bingol, we have done a research over how digital organism promotes the cancer cells. We provide an approach how the cancer cells evolves in a simulated digital organism which is based on graph and some related structures.&lt;br /&gt;&lt;br /&gt;The report of project is below&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:272px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100117012225-a29b0e045b4444779905270b40719e41&amp;amp;docName=cancer_in_digital_organism&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Digital%20Ogranism%20Simulates%20Life%20and%20Cancer%20Evolution&amp;amp;et=1263691476237&amp;amp;er=93" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:272px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100117012225-a29b0e045b4444779905270b40719e41&amp;amp;docName=cancer_in_digital_organism&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Digital%20Ogranism%20Simulates%20Life%20and%20Cancer%20Evolution&amp;amp;et=1263691476237&amp;amp;er=93" /&gt;&lt;/object&gt;&lt;br /&gt;&lt;br /&gt;Presentation&lt;br /&gt;&lt;br /&gt;&lt;object style="width:300px;height:112px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100117012622-34c456c14cb74e79a915c18abcb026e9&amp;amp;docName=project_presentation&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Presentation%20of%20Digital%20Organisms%20and%20Cancer%20Evolution&amp;amp;et=1263691786021&amp;amp;er=69" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:300px;height:112px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100117012622-34c456c14cb74e79a915c18abcb026e9&amp;amp;docName=project_presentation&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Presentation%20of%20Digital%20Organisms%20and%20Cancer%20Evolution&amp;amp;et=1263691786021&amp;amp;er=69" /&gt;&lt;/object&gt;&lt;br /&gt;&lt;br /&gt;and a four showcase of our organism for different mutation rates&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:452px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100117012858-2c1d035342f54596a2fea01d25685567&amp;amp;docName=showcase1&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Showcase%20of%20the%20project&amp;amp;et=1263691940437&amp;amp;er=43" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:452px" flashvars="mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=100117012858-2c1d035342f54596a2fea01d25685567&amp;amp;docName=showcase1&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Showcase%20of%20the%20project&amp;amp;et=1263691940437&amp;amp;er=43" /&gt;&lt;/object&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-6166687107292343950?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/6166687107292343950/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=6166687107292343950' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6166687107292343950'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6166687107292343950'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2010/01/digital-organism-and-reasons-for-cancer.html' title='Digital Organism and Reasons for Cancer Cells'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-907963983932699188</id><published>2009-12-02T12:06:00.000-08:00</published><updated>2009-12-02T12:07:31.643-08:00</updated><title type='text'>Why do we need Universal Grammer?</title><content type='html'>This is another questions asked Complex Systems.&lt;br /&gt;&lt;br /&gt;My work is at the following file&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:272px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091202200432-6f967b2af1eb4d4bb52740e95e43047b&amp;amp;docName=whydo_we_need_universal_grammer&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Why%20Do%20We%20Need%20Universal%20Grammer%3F&amp;amp;et=1259784372303&amp;amp;er=40" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:272px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091202200432-6f967b2af1eb4d4bb52740e95e43047b&amp;amp;docName=whydo_we_need_universal_grammer&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Why%20Do%20We%20Need%20Universal%20Grammer%3F&amp;amp;et=1259784372303&amp;amp;er=40" /&gt;&lt;/object&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-907963983932699188?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/907963983932699188/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=907963983932699188' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/907963983932699188'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/907963983932699188'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/12/why-do-we-need-universal-grammer.html' title='Why do we need Universal Grammer?'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-7937960267504663775</id><published>2009-12-02T12:00:00.000-08:00</published><updated>2009-12-02T12:05:34.301-08:00</updated><title type='text'>How to Communicate with ET?</title><content type='html'>This is an interesting question asked for homework at Complex Systems Lessons,&lt;br /&gt;&lt;br /&gt;Here is my answer&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:272px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091202200204-fd6fb9dc7398427aa23350bd1fb089ea&amp;amp;docName=how_to_communicate_with_et&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=How%20to%20Communicate%20with%20ET%3F&amp;amp;et=1259784321229&amp;amp;er=63" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:272px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091202200204-fd6fb9dc7398427aa23350bd1fb089ea&amp;amp;docName=how_to_communicate_with_et&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=How%20to%20Communicate%20with%20ET%3F&amp;amp;et=1259784321229&amp;amp;er=63" /&gt;&lt;/object&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-7937960267504663775?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/7937960267504663775/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=7937960267504663775' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7937960267504663775'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7937960267504663775'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/12/how-to-communicate-with-et.html' title='How to Communicate with ET?'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-5713901917373571431</id><published>2009-12-02T11:55:00.000-08:00</published><updated>2009-12-02T11:58:21.202-08:00</updated><title type='text'>Random Walk Survey - Homework</title><content type='html'>It is just a small review about random walks and its two example application is given.&lt;br /&gt;&lt;br /&gt;Random Walk is a concept that is surely used in many topics of Computer Science and it has a lot more contributions to do in the future. In this survey paper we are going to deal with the concept of random walk, its application areas and the future contributions. We also give some experimental details to show the nature of random walk.&lt;br /&gt;&lt;br /&gt;Here is the document&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:272px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091202195249-11fb14c173654661a22bc94ce418a5f0&amp;amp;docName=random_walk_odev&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Random%20Walk%20Survey&amp;amp;et=1259783867877&amp;amp;er=9" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:272px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091202195249-11fb14c173654661a22bc94ce418a5f0&amp;amp;docName=random_walk_odev&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Random%20Walk%20Survey&amp;amp;et=1259783867877&amp;amp;er=9" /&gt;&lt;/object&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-5713901917373571431?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/5713901917373571431/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=5713901917373571431' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5713901917373571431'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5713901917373571431'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/12/random-walk-survey-homework.html' title='Random Walk Survey - Homework'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-1325381189564338105</id><published>2009-11-23T02:46:00.000-08:00</published><updated>2009-11-23T02:57:16.711-08:00</updated><title type='text'>Maximum s-t Network Flow Algorithms</title><content type='html'>Recently, at one of the course at Boğaziçi University, we learned maximum s-t flow algorithms. One of the challenging part is to understand these algorithms and make them work on a sample graph. I guess that I can able to solve these algorithms on a given graph. Since the web lacks of the example run of both three algorithms; Capacity Scaling Algorithm, Edmond's Karp Algorithm and Ford Fulkerson Algorithm, I decided to post this message to the interested people.&lt;br /&gt;&lt;br /&gt;This is the sample run of both of the three algorithms, I will be happy if the figures are helpful, &lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:590px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091123105429-fcba7125246f4e8498dd455614e2445a&amp;amp;docName=maximum_s-t_flow_algorithms&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Maximum%20s-t%20flow%20algorithms&amp;amp;et=1258973806421&amp;amp;er=1" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:590px" flashvars="mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091123105429-fcba7125246f4e8498dd455614e2445a&amp;amp;docName=maximum_s-t_flow_algorithms&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Maximum%20s-t%20flow%20algorithms&amp;amp;et=1258973806421&amp;amp;er=1" /&gt;&lt;/object&gt;&lt;br /&gt;&lt;br /&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-1325381189564338105?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/1325381189564338105/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=1325381189564338105' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1325381189564338105'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1325381189564338105'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/11/maximum-s-t-network-flow-algorithms.html' title='Maximum s-t Network Flow Algorithms'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-5352882007653738769</id><published>2009-11-20T07:07:00.000-08:00</published><updated>2009-11-23T09:57:36.483-08:00</updated><title type='text'>Complex Systems Presentation</title><content type='html'>Recently, I am taking a course at Bogaziçi University, called Complex Systems. It is a graduate course and each week we present a paper the lesson. This is my last presentation, a review paper from Nowak et al. 2002. This paper explains both combinational and evolutionary aspects of language. The definition of language is investigated using formal language theory, learning theory and evolutionary dynamics. It is really interesting and maybe must be read paper on the area of language dynamics.&lt;br /&gt;&lt;br /&gt;Here is the presentation document via issue.com&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:157px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091123173927-c4899079e8d549ed8c10b6e3850118e5&amp;amp;docName=complex_systems_presentation_16_nov_2009&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Computatianal%20and%20Evolutionary%20Aspects%20of%20Language&amp;amp;et=1258998990073&amp;amp;er=99" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:157px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091123173927-c4899079e8d549ed8c10b6e3850118e5&amp;amp;docName=complex_systems_presentation_16_nov_2009&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Computatianal%20and%20Evolutionary%20Aspects%20of%20Language&amp;amp;et=1258998990073&amp;amp;er=99" /&gt;&lt;/object&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-5352882007653738769?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/5352882007653738769/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=5352882007653738769' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5352882007653738769'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5352882007653738769'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/11/complex-systems-presentation.html' title='Complex Systems Presentation'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-5655267257788289697</id><published>2009-11-06T03:57:00.000-08:00</published><updated>2009-11-06T04:05:58.694-08:00</updated><title type='text'>3D hierarchical drawing</title><content type='html'>Recently I am working on Irrlicht 3D Engine. The engine is so simple so that I can modify one of their sample code in order to partially 3d drawing of hierarchical layout. The results for the first time seems to be good and I decided to work on this.&lt;br /&gt;&lt;br /&gt;I put the mountain view at the back of the view and it is really interesting. &lt;br /&gt;&lt;br /&gt;Here are sample screens from the first code of mine at this engine&lt;br /&gt;&lt;br /&gt;&lt;object style="width:420px;height:148px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091106120328-03ce7188d0394ff68902b9e3175b1a0f&amp;amp;docName=hier_draw&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Hierarchicel%20Drawing%20in%202.5D&amp;amp;et=1257509094371&amp;amp;er=44" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:148px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091106120328-03ce7188d0394ff68902b9e3175b1a0f&amp;amp;docName=hier_draw&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Hierarchicel%20Drawing%20in%202.5D&amp;amp;et=1257509094371&amp;amp;er=44" /&gt;&lt;/object&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-5655267257788289697?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/5655267257788289697/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=5655267257788289697' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5655267257788289697'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5655267257788289697'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/11/3d-hierarchical-drawing.html' title='3D hierarchical drawing'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-3605861122326205424</id><published>2009-11-04T11:42:00.000-08:00</published><updated>2009-11-06T04:08:46.468-08:00</updated><title type='text'>Random Walk</title><content type='html'>I am following a course at Bogazici University. I did a random walk in 2D simulation using leda C++ library again. By the way this library is perfect when you learn some basic data types you can do most of your computer science homeworks.&lt;br /&gt;&lt;br /&gt;Here is some screens and final stats,&lt;br /&gt;&lt;br /&gt;&lt;object style="width:300px;height:234px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091104195917-3304b9bd15d9432391a4fbdb00b3984b&amp;amp;docName=random_walk&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Random%20Walk&amp;amp;et=1257509271758&amp;amp;er=37" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:300px;height:234px" flashvars="mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=091104195917-3304b9bd15d9432391a4fbdb00b3984b&amp;amp;docName=random_walk&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Random%20Walk&amp;amp;et=1257509271758&amp;amp;er=37" /&gt;&lt;/object&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-3605861122326205424?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/3605861122326205424/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=3605861122326205424' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3605861122326205424'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3605861122326205424'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/11/random-walk.html' title='Random Walk'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-2361388127300351959</id><published>2009-09-26T03:54:00.000-07:00</published><updated>2009-09-26T04:05:00.514-07:00</updated><title type='text'>Graphviz to LEDA convertor 2</title><content type='html'>Now I completed this convertor. Graphviz is more comfortable with drawings. The sample function and sample outputs are given below.&lt;br /&gt;&lt;br /&gt;Coding document&lt;br /&gt;&lt;br /&gt;&lt;div&gt;&lt;object style="width:420px;height:297px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=090926105959-dfff8cfc65964f8794ac5e3541432e08&amp;amp;docName=convertorledatographviz&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Coding%20Part&amp;amp;et=1253962914752&amp;amp;er=11" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:297px" flashvars="mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=090926105959-dfff8cfc65964f8794ac5e3541432e08&amp;amp;docName=convertorledatographviz&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Coding%20Part&amp;amp;et=1253962914752&amp;amp;er=11" /&gt;&lt;/object&gt;&lt;div style="width:420px;text-align:left;"&gt;&lt;a href="http://issuu.com/melihsozdinler/docs/convertorledatographviz?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true" target="_blank"&gt;Open publication&lt;/a&gt; - Free &lt;a href="http://issuu.com" target="_blank"&gt;publishing&lt;/a&gt; - &lt;a href="http://issuu.com/search?q=leda" target="_blank"&gt;More leda&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;br /&gt;&lt;br /&gt;Samples&lt;br /&gt;&lt;br /&gt;&lt;div&gt;&lt;object style="width:420px;height:291px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=090926110128-73f6fe533b634487a72e34fb56c991c1&amp;amp;docName=sample&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Samples&amp;amp;et=1253963076276&amp;amp;er=72" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:291px" flashvars="mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=090926110128-73f6fe533b634487a72e34fb56c991c1&amp;amp;docName=sample&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Samples&amp;amp;et=1253963076276&amp;amp;er=72" /&gt;&lt;/object&gt;&lt;div style="width:420px;text-align:left;"&gt;&lt;a href="http://issuu.com/melihsozdinler/docs/sample?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true" target="_blank"&gt;Open publication&lt;/a&gt; - Free &lt;a href="http://issuu.com" target="_blank"&gt;publishing&lt;/a&gt; - &lt;a href="http://issuu.com/search?q=sample" target="_blank"&gt;More sample&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-2361388127300351959?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/2361388127300351959/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=2361388127300351959' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2361388127300351959'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/2361388127300351959'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/09/graphviz-to-leda-convertor-2.html' title='Graphviz to LEDA convertor 2'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-5710544641967145956</id><published>2009-09-24T11:14:00.000-07:00</published><updated>2009-09-24T11:34:36.395-07:00</updated><title type='text'>Hypergraph Implementation in C++ using LEDA</title><content type='html'>I implemented a code for the specific graphs called "Hypergraphs". There are some works to be done. Here are header file and declerations&lt;br /&gt;&lt;br /&gt;&lt;div&gt;&lt;object style="width:300px;height:212px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=090924182752-0157878e8c924510a6429eb9e75ba9a1&amp;amp;docName=headerfile&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Header&amp;amp;et=1253817064281&amp;amp;er=14" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:300px;height:212px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=090924182752-0157878e8c924510a6429eb9e75ba9a1&amp;amp;docName=headerfile&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Header&amp;amp;et=1253817064281&amp;amp;er=14" /&gt;&lt;/object&gt;&lt;div style="width:300px;text-align:left;"&gt;&lt;a href="http://issuu.com/melihsozdinler/docs/headerfile?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true" target="_blank"&gt;Open publication&lt;/a&gt; - Free &lt;a href="http://issuu.com" target="_blank"&gt;publishing&lt;/a&gt; - &lt;a href="http://issuu.com/search?q=leda" target="_blank"&gt;More leda&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;br /&gt;&lt;br /&gt;&lt;div&gt;&lt;object style="width:300px;height:212px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=090924183349-d459fb841b1c482e915bc5335bc80c49&amp;amp;docName=declerationfile&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Declerations&amp;amp;et=1253817261359&amp;amp;er=19" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:300px;height:212px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=090924183349-d459fb841b1c482e915bc5335bc80c49&amp;amp;docName=declerationfile&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Declerations&amp;amp;et=1253817261359&amp;amp;er=19" /&gt;&lt;/object&gt;&lt;div style="width:300px;text-align:left;"&gt;&lt;a href="http://issuu.com/melihsozdinler/docs/declerationfile?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true" target="_blank"&gt;Open publication&lt;/a&gt; - Free &lt;a href="http://issuu.com" target="_blank"&gt;publishing&lt;/a&gt; - &lt;a href="http://issuu.com/search?q=hypergraph" target="_blank"&gt;More hypergraph&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;br /&gt;&lt;br /&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-5710544641967145956?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/5710544641967145956/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=5710544641967145956' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5710544641967145956'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5710544641967145956'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/09/hypergraph-implementation-in-c-using.html' title='Hypergraph Implementation in C++ using LEDA'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-6005756522650924242</id><published>2009-09-07T15:05:00.000-07:00</published><updated>2009-09-24T11:28:14.427-07:00</updated><title type='text'>Graphviz to LEDA convertor</title><content type='html'>I am able to use LEDA C++ library. For some applications and for some comparisons, I need to convert graphs from LEDA to Grapviz format. I am working on it, and I will post the LEDA source code later.&lt;br /&gt;&lt;br /&gt;I worked on the topic related with Directed Layered Graphs. I think that it would be useful to see existing graphs of LEDA in graphviz.&lt;br /&gt;&lt;br /&gt;Here is preliminary showcase of the work &lt;br /&gt;&lt;br /&gt;&lt;div&gt;&lt;object style="width:300px;height:412px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=081215220708-9327c424c7e74d538f1eab3e638eeb5e&amp;amp;docName=graph_union&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Graph%20Union%20Poster&amp;amp;et=1253816581420&amp;amp;er=54" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:300px;height:412px" flashvars="mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=081215220708-9327c424c7e74d538f1eab3e638eeb5e&amp;amp;docName=graph_union&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Graph%20Union%20Poster&amp;amp;et=1253816581420&amp;amp;er=54" /&gt;&lt;/object&gt;&lt;div style="width:300px;text-align:left;"&gt;&lt;a href="http://issuu.com/melihsozdinler/docs/graph_union?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true" target="_blank"&gt;Open publication&lt;/a&gt; - Free &lt;a href="http://issuu.com" target="_blank"&gt;publishing&lt;/a&gt; - &lt;a href="http://issuu.com/search?q=wolf" target="_blank"&gt;More wolf&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-6005756522650924242?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/6005756522650924242/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=6005756522650924242' title='2 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6005756522650924242'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/6005756522650924242'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/09/graphviz-to-leda-convertor.html' title='Graphviz to LEDA convertor'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>2</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-7311195621835609482</id><published>2009-09-02T15:46:00.000-07:00</published><updated>2009-09-02T15:57:17.202-07:00</updated><title type='text'>Simple Bicluster View Chart with Java</title><content type='html'>If you need the jar file or source code please send me an email. The program uses Jchart Package for Java.&lt;br /&gt;&lt;br /&gt;&lt;div&gt;&lt;object style="width:300px;height:424px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Fcolor%2Flayout.xml&amp;amp;backgroundColor=2A5083&amp;amp;showFlipBtn=true&amp;amp;documentId=090902225416-e395668480e74a7485f22df7cb449a7c&amp;amp;docName=biclusterview&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Bicluster%20Viewer&amp;amp;et=1251932224085&amp;amp;er=37" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:300px;height:424px" flashvars="mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Fcolor%2Flayout.xml&amp;amp;backgroundColor=2A5083&amp;amp;showFlipBtn=true&amp;amp;documentId=090902225416-e395668480e74a7485f22df7cb449a7c&amp;amp;docName=biclusterview&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Bicluster%20Viewer&amp;amp;et=1251932224085&amp;amp;er=37" /&gt;&lt;/object&gt;&lt;div style="width:300px;text-align:left;"&gt;&lt;a href="http://issuu.com/melihsozdinler/docs/biclusterview?mode=embed&amp;amp;viewMode=presentation&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Fcolor%2Flayout.xml&amp;amp;backgroundColor=2A5083&amp;amp;showFlipBtn=true" target="_blank"&gt;Open publication&lt;/a&gt; - Free &lt;a href="http://issuu.com" target="_blank"&gt;publishing&lt;/a&gt; - &lt;a href="http://issuu.com/search?q=viewer" target="_blank"&gt;More viewer&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-7311195621835609482?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/7311195621835609482/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=7311195621835609482' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7311195621835609482'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/7311195621835609482'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/09/simple-bicluster-view-chart-with-java.html' title='Simple Bicluster View Chart with Java'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-3223708706085070349</id><published>2009-05-17T02:58:00.000-07:00</published><updated>2009-05-17T03:07:51.041-07:00</updated><title type='text'>Nine Men's Morris</title><content type='html'>This is Nine Men's Morris game the graph is produced using LEDA C++ library. For the code please email me.&lt;br /&gt;&lt;br /&gt;&lt;div&gt;&lt;object style="width:300px;height:154px" &gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=090517100303-fbd85188af004eec9735ef3ec8b889a7&amp;amp;docName=ninemens&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Nine%20Men's%20Morris%20Game%20Graph%20with%20LEDA&amp;amp;et=1242554809125&amp;amp;er=81" /&gt;&lt;param name="allowfullscreen" value="true"/&gt;&lt;param name="menu" value="false"/&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:300px;height:154px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true&amp;amp;documentId=090517100303-fbd85188af004eec9735ef3ec8b889a7&amp;amp;docName=ninemens&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Nine%20Men's%20Morris%20Game%20Graph%20with%20LEDA&amp;amp;et=1242554809125&amp;amp;er=81" /&gt;&lt;/object&gt;&lt;div style="width:300px;text-align:left;"&gt;&lt;a href="http://issuu.com/melihsozdinler/docs/ninemens?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;showFlipBtn=true" target="_blank"&gt;Open publication&lt;/a&gt; - Free &lt;a href="http://issuu.com" target="_blank"&gt;publishing&lt;/a&gt; - &lt;a href="http://issuu.com/search?q=leda" target="_blank"&gt;More leda&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-3223708706085070349?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/3223708706085070349/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=3223708706085070349' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3223708706085070349'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/3223708706085070349'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/05/nine-mens-morris.html' title='Nine Men&apos;s Morris'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-8765338244391481822</id><published>2009-04-16T08:01:00.000-07:00</published><updated>2009-04-16T08:32:37.011-07:00</updated><title type='text'>BICoB 2009 Presentation</title><content type='html'>Last week, I was in New Orleans for BICoB 2009 conference. We presented a paper named "Biclustering Expression Data Based on Expanding Localized Substructures". It could be found &lt;a href="http://www.springer.com/computer/computational+biology+and+bioinformatics/book/978-3-642-00726-2"&gt;in this proceeding&lt;/a&gt;.&lt;br /&gt;&lt;br /&gt;My presentation&lt;br /&gt;&lt;br /&gt;&lt;div&gt;&lt;object style="width:420px;height:158px"&gt;&lt;param name="movie" value="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;documentId=090416151803-e1828b9c9b7b4d6988c5b6b8ee171158&amp;amp;docName=bicob_presentation_2009&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Bicob%202009%20Presentation&amp;amp;et=1239895922835&amp;amp;er=31"&gt;&lt;param name="allowfullscreen" value="true"&gt;&lt;param name="menu" value="false"&gt;&lt;embed src="http://static.issuu.com/webembed/viewers/style1/v1/IssuuViewer.swf" type="application/x-shockwave-flash" allowfullscreen="true" menu="false" style="width:420px;height:158px" flashvars="mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml&amp;amp;documentId=090416151803-e1828b9c9b7b4d6988c5b6b8ee171158&amp;amp;docName=bicob_presentation_2009&amp;amp;username=melihsozdinler&amp;amp;loadingInfoText=Bicob%202009%20Presentation&amp;amp;et=1239895922835&amp;amp;er=31"&gt;&lt;/embed&gt;&lt;/object&gt;&lt;div style="width:420px;text-align:left;"&gt;&lt;a href="http://issuu.com/melihsozdinler/docs/bicob_presentation_2009?mode=embed&amp;amp;layout=http%3A%2F%2Fskin.issuu.com%2Fv%2Flight%2Flayout.xml" target="_blank"&gt;Open publication&lt;/a&gt; - Free &lt;a href="http://issuu.com" target="_blank"&gt;publishing&lt;/a&gt; - &lt;a href="http://issuu.com/search?q=bicob" target="_blank"&gt;More bicob&lt;/a&gt;&lt;/div&gt;&lt;/div&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-8765338244391481822?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/8765338244391481822/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=8765338244391481822' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8765338244391481822'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/8765338244391481822'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/04/bicob-2009-presentation.html' title='BICoB 2009 Presentation'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-5460015547862988257</id><published>2009-03-17T10:05:00.000-07:00</published><updated>2009-03-17T10:10:11.121-07:00</updated><title type='text'>Biclustering</title><content type='html'>I am still working on Biclustering topic. If anybody comes with the idea, we can implement and publish papers.  Now, I am trying to improve BICoB paper with my Master Degree advisor, Dr. Cesim Erten.  We are about to submit a journal paper.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-5460015547862988257?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/5460015547862988257/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=5460015547862988257' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5460015547862988257'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/5460015547862988257'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/03/biclustering.html' title='Biclustering'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4712541270563034100</id><published>2009-03-17T10:00:00.000-07:00</published><updated>2009-03-17T10:11:45.410-07:00</updated><title type='text'>AI Vacuum Cleaner Agent Implementation</title><content type='html'>Nowadays, I am trying to simulate a vacuum cleaner as a homework for AI course. I am using LEDA C++ library and I will include the implementation details later. Who may need the source code should send an email &lt;a href="mailto:sozdinlermelih@gmail.com"&gt;sozdinlermelih@gmail.com&lt;/a&gt; . However, I will be able to send it after the grade assesment and you should have the licensed LEDA C++ library in order to execute.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4712541270563034100?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4712541270563034100/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4712541270563034100' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4712541270563034100'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4712541270563034100'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2009/03/ai-vacuum-cleaner-agent-implementation.html' title='AI Vacuum Cleaner Agent Implementation'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-1830574563603039138</id><published>2008-11-28T11:54:00.000-08:00</published><updated>2008-11-28T11:57:45.895-08:00</updated><title type='text'>Essays</title><content type='html'>We are writing essays as a hobby with my friends. You can follow &lt;a href="http://toeflgencligi.blogspot.com/"&gt;our link&lt;/a&gt; in order to see sample essays.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-1830574563603039138?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/1830574563603039138/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=1830574563603039138' title='0 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1830574563603039138'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/1830574563603039138'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2008/11/essays.html' title='Essays'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry><entry><id>tag:blogger.com,1999:blog-840844090656259510.post-4977702835520318576</id><published>2008-11-19T04:51:00.000-08:00</published><updated>2008-11-23T12:52:11.664-08:00</updated><title type='text'>Melih Sözdinler</title><content type='html'>Greetings from Turkey, welcome. I am using this blog as my personal agenda. I am planning to publish my projects and my written essays over different topics in that blog. Please stay connected.&lt;br /&gt;&lt;br /&gt;You can also see my CV at the tabbed webpages or by simply &lt;a href="http://melihsozdinler.blogspot.com/2008/11/my-curriculum-vitae.html"&gt;clicking here&lt;/a&gt;.&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/840844090656259510-4977702835520318576?l=melihsozdinler.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://melihsozdinler.blogspot.com/feeds/4977702835520318576/comments/default' title='Kayıt Yorumları'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=840844090656259510&amp;postID=4977702835520318576' title='1 Yorum'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4977702835520318576'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/840844090656259510/posts/default/4977702835520318576'/><link rel='alternate' type='text/html' href='http://melihsozdinler.blogspot.com/2008/11/melih-szdinler.html' title='Melih Sözdinler'/><author><name>Melih</name><uri>http://www.blogger.com/profile/02199314280700330804</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>1</thr:total></entry></feed>
