Graphminator

14 Kasım 2010 Pazar

8 Kasım 2010 Pazartesi

Graph Tip for the 9th of November

How can be the visualisation of the same graph differ? If you are lucky to simplify the original graph, surely you can have better visualizations and better execution times.

31 Ekim 2010 Pazar

Graph of Today III

Romantic relationship network in US school. Blue ones are male and pink ones are female. The data is within 18 months.

26 Ekim 2010 Salı

Today's graph is based on the orthogonal layout. Interstingly, a biological notation called MIM notation requires circuitwise drawings. In my recent project, we use OGDF's orthogonal layout and obtained following figure.

25 Ekim 2010 Pazartesi

Graph of Today

Today I was looking brand new graph libraries and I see NetwokX. It is nice with really good visuals. The base language is python and makes it easier to understand and develop.

Here is the nice example

My Publications

Journal Papers

3. Ahmet Emre Aladağ, Cesim Erten, Melih Sozdinler, "Robinviz: Reliability Oriented Bioinformatic Networks Visualization", Bioinformatics(2011) 27(11):1583-1584, doi: 10.1093/bioinformatics/btr178,

http://bioinformatics.oxfordjournals.org/content/27/11/1583

website: http://code.google.com/p/robinviz/

2. Cesim Erten, Melih Sozdinler, "Improving performances of suboptimal greedy iterative biclustering heuristics via localization" Bioinformatics 26(20): 2594-2600 ,2010,

website: http://code.google.com/p/biclustering/

1. A.O. Cakiroglu, C. Erten, O. Karatas, M. Sozdinler, "Crossing Minimization in Weighted Bipartite Graphs", Journal of Discrete Algorithms (JDA), vol.7, no.4, pp.439-452, 2009.

Conference Papers

4. A. E. Aladağ, C. Erten, M. Sozdinler,"An integrated model for visualizing biclusters from gene expression data and PPI networks", Proc. Int. Symp. on Biocomputing (ISB), ACM New York, NY, USA, pp.1-8, 2010

3. C. Erten, M. Sozdinler, "Biclustering Expression Data Based on Expanding Localized Substructures", Proc. Int. Conf. on Bioinformatics and Computational Biology (BICOB), Lecture Notes in Bioinformatics 5462, pp.224-235, 2009.

2. C. Erten, M. Sozdinler, "A Robust Biclustering Method Based on Crossing Minimization in Bipartite Graphs", Proc. Int. Symp. Graph Drawing (GD), Lecture Notes in Computer Science 5417, pp. 439-440, 2009.

1. A.O. Cakiroglu, C. Erten, O. Karatas, M. Sozdinler, "Crossing Minimization in Weighted Bipartite Graphs", Proc. 6th Workshop on Experimental Algorithms (WEA), Lecture Notes in Computer Science 4525, pp. 122-135, 2007.

Graphminator

14 Kasım 2010 Pazar

Graph of Today

8 Kasım 2010 Pazartesi

Graph Tip for the 9th of November

31 Ekim 2010 Pazar

Graph of Today III

26 Ekim 2010 Salı

Graph of Today II

25 Ekim 2010 Pazartesi

Graph of Today

Hakkımda

Etiketler