Graphminator

16 Nisan 2009 Perşembe

BICoB 2009 Presentation

Last week, I was in New Orleans for BICoB 2009 conference. We presented a paper named "Biclustering Expression Data Based on Expanding Localized Substructures". It could be found in this proceeding.

My presentation

Open publication - Free publishing - More bicob

17 Mart 2009 Salı

Biclustering

I am still working on Biclustering topic. If anybody comes with the idea, we can implement and publish papers. Now, I am trying to improve BICoB paper with my Master Degree advisor, Dr. Cesim Erten. We are about to submit a journal paper.

AI Vacuum Cleaner Agent Implementation

Nowadays, I am trying to simulate a vacuum cleaner as a homework for AI course. I am using LEDA C++ library and I will include the implementation details later. Who may need the source code should send an email sozdinlermelih@gmail.com . However, I will be able to send it after the grade assesment and you should have the licensed LEDA C++ library in order to execute.

28 Kasım 2008 Cuma

Essays

We are writing essays as a hobby with my friends. You can follow our link in order to see sample essays.

19 Kasım 2008 Çarşamba

Melih Sözdinler

Greetings from Turkey, welcome. I am using this blog as my personal agenda. I am planning to publish my projects and my written essays over different topics in that blog. Please stay connected.

You can also see my CV at the tabbed webpages or by simply clicking here.

My Publications

Journal Papers

3. Ahmet Emre Aladağ, Cesim Erten, Melih Sozdinler, "Robinviz: Reliability Oriented Bioinformatic Networks Visualization", Bioinformatics(2011) 27(11):1583-1584, doi: 10.1093/bioinformatics/btr178,

http://bioinformatics.oxfordjournals.org/content/27/11/1583

website: http://code.google.com/p/robinviz/

2. Cesim Erten, Melih Sozdinler, "Improving performances of suboptimal greedy iterative biclustering heuristics via localization" Bioinformatics 26(20): 2594-2600 ,2010,

website: http://code.google.com/p/biclustering/

1. A.O. Cakiroglu, C. Erten, O. Karatas, M. Sozdinler, "Crossing Minimization in Weighted Bipartite Graphs", Journal of Discrete Algorithms (JDA), vol.7, no.4, pp.439-452, 2009.

Conference Papers

4. A. E. Aladağ, C. Erten, M. Sozdinler,"An integrated model for visualizing biclusters from gene expression data and PPI networks", Proc. Int. Symp. on Biocomputing (ISB), ACM New York, NY, USA, pp.1-8, 2010

3. C. Erten, M. Sozdinler, "Biclustering Expression Data Based on Expanding Localized Substructures", Proc. Int. Conf. on Bioinformatics and Computational Biology (BICOB), Lecture Notes in Bioinformatics 5462, pp.224-235, 2009.

2. C. Erten, M. Sozdinler, "A Robust Biclustering Method Based on Crossing Minimization in Bipartite Graphs", Proc. Int. Symp. Graph Drawing (GD), Lecture Notes in Computer Science 5417, pp. 439-440, 2009.

1. A.O. Cakiroglu, C. Erten, O. Karatas, M. Sozdinler, "Crossing Minimization in Weighted Bipartite Graphs", Proc. 6th Workshop on Experimental Algorithms (WEA), Lecture Notes in Computer Science 4525, pp. 122-135, 2007.