18 Mayıs 2010 Salı

Protein Protein Interaction Visualization

An interesting java applet based on force directed layout is published in journal and its applet is available at http://www.charite.de/bioinformatics/interaction/yeast.html

5 Mayıs 2010 Çarşamba

4 Mayıs 2010 Salı

3 Mayıs 2010 Pazartesi

2 Mayıs 2010 Pazar

Graphviz - Command Line

Today I would like to mention about graphviz command line in windows XP.

You can use each binary executable at \bin folder. For example for dot.exe and given input.gv file, you can produce pdf,png,jpg outputs as follows;

PNG : dot -Tpng input.gv -o out.png
JPG : dot -Tjpg input.gv -o out.jpg
PDF : dot -Tpdf input.gv -o out.pdf

This is useful since you can easily show your random graphs in hierarchical layout.