Graphminator: Protein Protein Interaction Visualization

An interesting java applet based on force directed layout is published in journal and its applet is available at http://www.charite.de/bioinformatics/interaction/yeast.html

My Publications

Journal Papers

3. Ahmet Emre Aladağ, Cesim Erten, Melih Sozdinler, "Robinviz: Reliability Oriented Bioinformatic Networks Visualization", Bioinformatics(2011) 27(11):1583-1584, doi: 10.1093/bioinformatics/btr178,

http://bioinformatics.oxfordjournals.org/content/27/11/1583

website: http://code.google.com/p/robinviz/

2. Cesim Erten, Melih Sozdinler, "Improving performances of suboptimal greedy iterative biclustering heuristics via localization" Bioinformatics 26(20): 2594-2600 ,2010,

website: http://code.google.com/p/biclustering/

1. A.O. Cakiroglu, C. Erten, O. Karatas, M. Sozdinler, "Crossing Minimization in Weighted Bipartite Graphs", Journal of Discrete Algorithms (JDA), vol.7, no.4, pp.439-452, 2009.

Conference Papers

4. A. E. Aladağ, C. Erten, M. Sozdinler,"An integrated model for visualizing biclusters from gene expression data and PPI networks", Proc. Int. Symp. on Biocomputing (ISB), ACM New York, NY, USA, pp.1-8, 2010

3. C. Erten, M. Sozdinler, "Biclustering Expression Data Based on Expanding Localized Substructures", Proc. Int. Conf. on Bioinformatics and Computational Biology (BICOB), Lecture Notes in Bioinformatics 5462, pp.224-235, 2009.

2. C. Erten, M. Sozdinler, "A Robust Biclustering Method Based on Crossing Minimization in Bipartite Graphs", Proc. Int. Symp. Graph Drawing (GD), Lecture Notes in Computer Science 5417, pp. 439-440, 2009.

1. A.O. Cakiroglu, C. Erten, O. Karatas, M. Sozdinler, "Crossing Minimization in Weighted Bipartite Graphs", Proc. 6th Workshop on Experimental Algorithms (WEA), Lecture Notes in Computer Science 4525, pp. 122-135, 2007.

Graphminator

18 Mayıs 2010 Salı

Protein Protein Interaction Visualization

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